BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 11293

Title: Solution structure of the LIM domain of human Cysteine-rich protein 2

Deposition date: 2010-08-09 Original release date: 2011-08-19

Authors: Yoneyama, M.; Sasagawa, A.; Tomizawa, T.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation: Yoneyama, M.; Sasagawa, A.; Tomizawa, T.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the LIM domain of human Cysteine-rich protein 2"  . ., .-..

Assembly members:
LIM domain, polymer, 76 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free

Entity Sequences (FASTA):
LIM domain: GSSGSSGMASKCPKCDKTVY FAEKVSSLGKDWHKFCLKCE RCSKTLTPGGHAEHDGKPFC HKPCYATLFGSGPSSG

Data sets:
Data typeCount
13C chemical shifts300
15N chemical shifts62
1H chemical shifts443

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1LIM domain1
2ZINC ION no.12
3ZINC ION no.22

Entities:

Entity 1, LIM domain 76 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYMETALASER
2   LYSCYSPROLYSCYSASPLYSTHRVALTYR
3   PHEALAGLULYSVALSERSERLEUGLYLYS
4   ASPTRPHISLYSPHECYSLEULYSCYSGLU
5   ARGCYSSERLYSTHRLEUTHRPROGLYGLY
6   HISALAGLUHISASPGLYLYSPROPHECYS
7   HISLYSPROCYSTYRALATHRLEUPHEGLY
8   SERGLYPROSERSERGLY

Entity 2, ZINC ION no.1 - Zn - 65.409 Da.

1   ZN

Samples:

sample_1: LIM domain, [U-13C; U-15N], 0.44 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 2 mM; NaN3 0.02%; ZnCl2 0.01 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.9295, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 600 MHz

Related Database Links:

PDB
DBJ BAH13206
GB EDL18559 EDL97393 EDL97397 EFB24298 EGV94916
REF NP_001257766 XP_002189362 XP_002808516 XP_002928938 XP_004055856

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts