BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 11390

Title: Solution structure of the death domain of Ankyrin-1

Deposition date: 2010-09-08 Original release date: 2011-09-08

Authors: Tanabe, W.; Suzuki, S.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.

Citation: Tanabe, W.; Suzuki, S.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.. "Solution structure of the death domain of Ankyrin-1"  . ., .-..

Assembly members:
death domain, UNP residues 1394-1497, polymer, 111 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free

Entity Sequences (FASTA):
death domain, UNP residues 1394-1497: GSSGSSGPGSLSGTEQAEMK MAVISEHLGLSWAELARELQ FSVEDINRIRVENPNSLLEQ SVALLNLWVIREGQNANMEN LYTALQSIDRGEIVNMLEGS GRQSRNLKPDR

Data sets:
Data typeCount
13C chemical shifts409
15N chemical shifts112
1H chemical shifts709

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1death domain, UNP residues 1394-14971

Entities:

Entity 1, death domain, UNP residues 1394-1497 111 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYPROGLYSER
2   LEUSERGLYTHRGLUGLNALAGLUMETLYS
3   METALAVALILESERGLUHISLEUGLYLEU
4   SERTRPALAGLULEUALAARGGLULEUGLN
5   PHESERVALGLUASPILEASNARGILEARG
6   VALGLUASNPROASNSERLEULEUGLUGLN
7   SERVALALALEULEUASNLEUTRPVALILE
8   ARGGLUGLYGLNASNALAASNMETGLUASN
9   LEUTYRTHRALALEUGLNSERILEASPARG
10   GLYGLUILEVALASNMETLEUGLUGLYSER
11   GLYARGGLNSERARGASNLEULYSPROASP
12   ARG

Samples:

sample_1: death domain, UNP residues 1394-1497 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20060702, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAD92655 BAG54351
EMBL CAA34610 CAA34611
GB AAA51732 AAB47805 AAI56402 EAW63241 EAW63242
PIR B35049
PRF 1605244A
REF NP_000028 NP_001135918 NP_065208 NP_065209 NP_065210
SP P16157

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts