BMRB Entry 15074

Name: Assignment of the 1H, 15N and 13C resonances and determination of the 3D- structure of In-Between-RING (IBR) domain of Parkin
Published: 2007-05-09

Click here to enlarge.

PDB ID: 2jmo
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR15074
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title: Assignment of the 1H, 15N and 13C resonances and determination of the 3D- structure of In-Between-RING (IBR) domain of Parkin PubMed: 17360614

Deposition date: 2006-12-12 Original release date: 2007-05-09

Authors: Shaw, Gary; Beasley, Steven

Citation: Beasley, Steven; Hristova, Ventzislava; Shaw, Gary. "Structure of the Parkin in-between-ring domain provides insights for E3-ligase dysfunction in autosomal recessive Parkinson's disease." Proc. Natl. Acad. Sci. U. S. A. 104, 3095-3100 (2007).

Assembly members:
IBR_domain_of_human_Parkin, polymer, 80 residues, 8610.6 Da.
ZN, non-polymer, 65.409 Da.

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
IBR_domain_of_human_Parkin: GHMGEEQYNRYQQYGAEECV LQMGGVLCPRPGCGAGLLPE PDQRKVTCEGGNGLGCGFAF CRECKEAYHEGECSAVFEAS

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	289
15N chemical shifts	81
1H chemical shifts	475

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Entity Assembly ID	Entity Name	Entity ID
1	IBR domain of Parkin	1
2	zinc ion, 1	2
3	zinc ion, 2	2

1	GLY	HIS	MET	GLY	GLU	GLU	GLN	TYR	ASN	ARG
2	TYR	GLN	GLN	TYR	GLY	ALA	GLU	GLU	CYS	VAL
3	LEU	GLN	MET	GLY	GLY	VAL	LEU	CYS	PRO	ARG
4	PRO	GLY	CYS	GLY	ALA	GLY	LEU	LEU	PRO	GLU
5	PRO	ASP	GLN	ARG	LYS	VAL	THR	CYS	GLU	GLY
6	GLY	ASN	GLY	LEU	GLY	CYS	GLY	PHE	ALA	PHE
7	CYS	ARG	GLU	CYS	LYS	GLU	ALA	TYR	HIS	GLU
8	GLY	GLU	CYS	SER	ALA	VAL	PHE	GLU	ALA	SER

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HC(CO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_2	isotropic	sample_conditions_1
3D HBCBCHCDHD	sample_2	isotropic	sample_conditions_1
2D NOESY	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_2	isotropic	sample_conditions_1

PDB	2JMO 4BM9 4I1F 4I1H 5C1Z 5C23 5C9V
DBJ	BAA25751 BAF43729 BAF85279 BAG57845 BAI46122
EMBL	CAH90914
GB	AAM21457 AAM21459 AAM21461 AAS88422 ADB90270
REF	NP_001125521 NP_004553 NP_054642 NP_054643 XP_001099588
SP	O60260

Biological Magnetic Resonance Data Bank

BMRB Entry 15074

Title: Assignment of the 1H, 15N and 13C resonances and determination of the 3D- structure of In-Between-RING (IBR) domain of Parkin PubMed: 17360614

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	HIS	MET	GLY	GLU	GLU	GLN	TYR	ASN	ARG
2	TYR	GLN	GLN	TYR	GLY	ALA	GLU	GLU	CYS	VAL
3	LEU	GLN	MET	GLY	GLY	VAL	LEU	CYS	PRO	ARG
4	PRO	GLY	CYS	GLY	ALA	GLY	LEU	LEU	PRO	GLU
5	PRO	ASP	GLN	ARG	LYS	VAL	THR	CYS	GLU	GLY
6	GLY	ASN	GLY	LEU	GLY	CYS	GLY	PHE	ALA	PHE
7	CYS	ARG	GLU	CYS	LYS	GLU	ALA	TYR	HIS	GLU
8	GLY	GLU	CYS	SER	ALA	VAL	PHE	GLU	ALA	SER

1	GLY	HIS	MET	GLY	GLU	GLU	GLN	TYR	ASN	ARG
2	TYR	GLN	GLN	TYR	GLY	ALA	GLU	GLU	CYS	VAL
3	LEU	GLN	MET	GLY	GLY	VAL	LEU	CYS	PRO	ARG
4	PRO	GLY	CYS	GLY	ALA	GLY	LEU	LEU	PRO	GLU
5	PRO	ASP	GLN	ARG	LYS	VAL	THR	CYS	GLU	GLY
6	GLY	ASN	GLY	LEU	GLY	CYS	GLY	PHE	ALA	PHE
7	CYS	ARG	GLU	CYS	LYS	GLU	ALA	TYR	HIS	GLU
8	GLY	GLU	CYS	SER	ALA	VAL	PHE	GLU	ALA	SER

1	GLY	HIS	MET	GLY	GLU	GLU	GLN	TYR	ASN	ARG
2	TYR	GLN	GLN	TYR	GLY	ALA	GLU	GLU	CYS	VAL
3	LEU	GLN	MET	GLY	GLY	VAL	LEU	CYS	PRO	ARG
4	PRO	GLY	CYS	GLY	ALA	GLY	LEU	LEU	PRO	GLU
5	PRO	ASP	GLN	ARG	LYS	VAL	THR	CYS	GLU	GLY
6	GLY	ASN	GLY	LEU	GLY	CYS	GLY	PHE	ALA	PHE
7	CYS	ARG	GLU	CYS	LYS	GLU	ALA	TYR	HIS	GLU
8	GLY	GLU	CYS	SER	ALA	VAL	PHE	GLU	ALA	SER