BMRB Entry 15258

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PDB ID: 2jpq
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR15258
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: NMR solution structure of Vibrio parahaemolyticus VP2129 homodimer. Northeast Structural Genomics target VpR61.

Deposition date: 2007-05-21 Original release date: 2007-06-14

Authors: Ramelot, Theresa; Cort, John; Wang, Huang; Nwosu, Chioma; Cunningham, Kellie; Owens, Leah; Ma, Li-Chung; Xiao, Rong; Liu, Jinfeng; Baran, Michael; Swapna, G.V.T.; Acton, Thomas; Rost, Burkhard; Montelione, Gaetano; Kennedy, Michael

Citation: Ramelot, Theresa; Cort, John; Montelione, Gaetano; Kennedy, Michael. "Solution NMR structure of Vibrio parahaemolyticus VP2129. Northeast Structural Genomics" . ., .-..

Assembly members:
VP2129, polymer, 166 residues, 18557.6 Da.

Natural source: Common Name: Vibrio parahaemolyticus Taxonomy ID: 670 Superkingdom: Bacteria Kingdom: not available Genus/species: Vibrio parahaemolyticus

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
VP2129: MPITSKYTDEQVEKILAEVA LVLEKHAASPELTLMIAGNI ATNVLNQRVAASQRKLIAEK FAQALMSSLETPKTHLEHHH HHHMPITSKYTDEQVEKILA EVALVLEKHAASPELTLMIA GNIATNVLNQRVAASQRKLI AEKFAQALMSSLETPKTHLE HHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
spectral_peak_list

Data type	Count
13C chemical shifts	348
15N chemical shifts	86
1H chemical shifts	587

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Entity Assembly ID	Entity Name	Entity ID
1	subunit 1	1
2	subunit 2	1

Samples:

NC_sample: VP2129, [U-13C; U-15N], 1.4 ± 0.1 mM; sodium chloride 100 ± 5 mM; calcium chloride 5 ± 0.25 mM; ammonium acetate 20 ± 1 mM; DTT 10 ± 0.5 mM; sodium azide 0.02 ± 0.001 %; H2O 95%; D2O 5%

NC5_sample: VP2129, [U-5% 13C; U-100% 15N], 1.4 ± 0.1 mM; sodium chloride 100 ± 5 mM; calcium chloride 5 ± 0.25 mM; ammonium acetate 20 ± 1 mM; DTT 10 ± 0.5 mM; sodium azide 0.02 ± 0.001 %; H2O 95%; D2O 5%

NC_in_D2O: VP2129, [U-13C; U-15N], 1.4 ± 0.1 mM; sodium chloride 100 ± 5 mM; calcium chloride 5 ± 0.25 mM; ammonium acetate 20 ± 1 mM; DTT 10 ± 0.5 mM; sodium azide 0.02 ± 0.001 %; D2O 100%

NC50_sample_in_D2O: VP2129, [U-13C; U-15N], 0.4 ± 0.1 mM; sodium chloride 100 ± 5 mM; calcium chloride 5 ± 0.25 mM; ammonium acetate 20 ± 1 mM; DTT 10 ± 0.5 mM; sodium azide 0.02 ± 0.001 %; VP2129 0.4 ± 0.1 mM; D2O 100%

sample_conditions_1: ionic strength: 0.1 M; pH: 5.5; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	NC_sample	isotropic	sample_conditions_1
2D 1H-13C HSQC (aliph)	NC_sample	isotropic	sample_conditions_1
3D 1H-15N NOESY	NC_sample	isotropic	sample_conditions_1
3D 1H-13C NOESY aliph	NC_sample	isotropic	sample_conditions_1
3D HNCACB	NC_sample	isotropic	sample_conditions_1
2D 1H-13C HSQC	NC5_sample	isotropic	sample_conditions_1
3D 1H-13C NOESY	NC_in_D2O	isotropic	sample_conditions_1
4D 1H-13C NOESY	NC_in_D2O	isotropic	sample_conditions_1
3D HBHA(CO)NH	NC_sample	isotropic	sample_conditions_1
3D HNHA	NC_sample	isotropic	sample_conditions_1
3D CBCA(CO)NH	NC_sample	isotropic	sample_conditions_1
3D HNCA	NC_sample	isotropic	sample_conditions_1
3D HN(CO)CA	NC_sample	isotropic	sample_conditions_1
3D HNCO	NC_sample	isotropic	sample_conditions_1
3D C(CO)NH	NC_sample	isotropic	sample_conditions_1
3D HCCH-COSY	NC_sample	isotropic	sample_conditions_1
3D HCCH-TOCSY	NC_sample	isotropic	sample_conditions_1
2D 1H-13C HSQC	NC_in_D2O	isotropic	sample_conditions_1
2D 1H-15N HSQC (30 min)	NC_in_D2O	isotropic	sample_conditions_1
3D edited filtered 1H-13C NOESY	NC50_sample_in_D2O	isotropic	sample_conditions_1
3D 1H-13C NOESY arom	NC_sample	isotropic	sample_conditions_1
2D 1H-13C HSQC (arom ct)	NC_sample	isotropic	sample_conditions_1
2D 1H-13C HSQC (arom no ct)	NC_sample	isotropic	sample_conditions_1
2D 1H-15N HSQC (1 hr)	NC_in_D2O	isotropic	sample_conditions_1
2D 1H-15N HSQC (4 days)	NC_in_D2O	isotropic	sample_conditions_1

PIR	PIRSF006188
SWS	Q87MV2
PDB	2JPQ

Biological Magnetic Resonance Data Bank

BMRB Entry 15258

Title: NMR solution structure of Vibrio parahaemolyticus VP2129 homodimer. Northeast Structural Genomics target VpR61.

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