BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 15412

Title: Backbone 1H, 13C, and 15N Chemical Shift Assignments for Snu13p   PubMed: 19636910

Deposition date: 2007-07-31 Original release date: 2007-12-10

Authors: Workman, Hillary; Skalicky, Jack; Flynn, Peter

Citation: Workman, Hillary; Skalicky, Jack; Flynn, Peter. "Assignment of 1H, 13C, and 15N resonances of the RNA binding protein Snu13p from Saccharomyces cerevisiae"  Biomol. NMR Assignments 2, 1-3 (2008).

Assembly members:
Snu13p, polymer, 136 residues, Formula weight is not available

Natural source:   Common Name: baker   Taxonomy ID: 4932   Superkingdom: not available   Kingdom: not available   Genus/species: Eukaryota Fungi

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
Snu13p: MASSAPNPKAFPLADAALTQ QILDVVQQAANLRQLKKGAN EATKTLNRGISEFIIMAADC EPIEILLHLPLLCEDKNVPY VFVPSRVALGRACGVSRPVI AASITTNDASAIKTQIYAVK DKIETLLILEHHHHHH

Data sets:
Data typeCount
13C chemical shifts549
15N chemical shifts130
1H chemical shifts900

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Snu13p1

Entities:

Entity 1, Snu13p 136 residues - Formula weight is not available

1   METALASERSERALAPROASNPROLYSALA
2   PHEPROLEUALAASPALAALALEUTHRGLN
3   GLNILELEUASPVALVALGLNGLNALAALA
4   ASNLEUARGGLNLEULYSLYSGLYALAASN
5   GLUALATHRLYSTHRLEUASNARGGLYILE
6   SERGLUPHEILEILEMETALAALAASPCYS
7   GLUPROILEGLUILELEULEUHISLEUPRO
8   LEULEUCYSGLUASPLYSASNVALPROTYR
9   VALPHEVALPROSERARGVALALALEUGLY
10   ARGALACYSGLYVALSERARGPROVALILE
11   ALAALASERILETHRTHRASNASPALASER
12   ALAILELYSTHRGLNILETYRALAVALLYS
13   ASPLYSILEGLUTHRLEULEUILELEUGLU
14   HISHISHISHISHISHIS

Samples:

sample_1: Snu13p, [U-100% 13C; U-100% 15N], 1 mM; sodium acetate 50 mM; sodium chloride 50 mM; D2O 10%

sample_conditions_1: ionic strength: 100 mM; pH: 5.5; pressure: 1 atm; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D HCCH-COSYsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D 13C-15N HSQC-NOESYsample_1isotropicsample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

PDB
DBJ GAA22798
EMBL CAY79137 CCC67393 CCF58728 CCK73464
GB AAB64503 AAS56703 AHY75526 AJP38240 AJU39930
REF NP_010888 XP_003673774 XP_003957863 XP_003980140
SP P39990
TPG DAA07626

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts