BMRB Entry 15544
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15544
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Title: Solution structure of designed peptide YW12D in the presence of SDS micelle PubMed: 18328260
Deposition date: 2007-11-05 Original release date: 2008-08-19
Authors: Bhunia, Anirban; Bhattacharjya, Surajit
Citation: Bhunia, Anirban; Chua, Geok Lin; Domadia, Prerna; Warshakoon, Hemamali; Cromer, Jens; David, Sunil; Bhattacharjya, Surajit. "Interactions of a designed peptide with lipopolysaccharide: Bound conformation and anti-endotoxic activity" Biochem. Biophys. Res. Commun. 369, 853-857 (2008).
Assembly members:
YW12D_SDS, polymer, 12 residues, 1657.134 Da.
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: Standard F-moc solid phase peptide synthesised Host organism: solid phase peptide synthesis
Entity Sequences (FASTA):
YW12D_SDS: YVKLWRMIKFIR
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 84 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | YW12D_SDS | 1 |
Entities:
Entity 1, YW12D_SDS 12 residues - 1657.134 Da.
| 1 | TYR | VAL | LYS | LEU | TRP | ARG | MET | ILE | LYS | PHE | ||||
| 2 | ILE | ARG |
Samples:
sample_1: YW12D_SDS 0.5 mM
sample_conditions_1: pH: 4.5; temperature: 308 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H trNOESY | sample_1 | isotropic | sample_conditions_1 |
Software:
DYANA v1.5, Guntert, Braun and Wuthrich - refinement
NMR spectrometers:
- Bruker DRX 600 MHz