BMRB Entry 15637

Name: Structure of SDF1 in complex with the CXCR4 N-terminus containing sulfotyrosines at postitions 7, 12 and 21
Published: 2008-11-06

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PDB ID: 2k05
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR15637
MolProbity Validation Chart

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Structure of SDF1 in complex with the CXCR4 N-terminus containing sulfotyrosines at postitions 7, 12 and 21 PubMed: 18799424

Deposition date: 2008-01-24 Original release date: 2008-11-06

Authors: Volkman, B.; Veldkamp, C.; Peterson, F.

Citation: Veldkamp, Christopher; Seibert, Christoph; Peterson, Francis; De la Cruz, Noberto; Haugner, John; Basnet, Harihar; Sakmar, Thomas; Volkman, Brian. "Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12" Sci. Signal. 1, ra4-ra4 (2008).

Assembly members:
CXCL12/SDF1-alpha, polymer, 70 residues, 8188.810 Da.
CXCR4, polymer, 40 residues, 4518.798 Da.

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo Sapiens

Experimental source: Production method: recombinant technology Host organism: Excherichia coli

Entity Sequences (FASTA):
CXCL12/SDF1-alpha: GMKPVSLSYRCPCRFFESHV ARANVKHLKILNTPNCACQI VARLKNNNRQVCIDPKLKWI QEYLEKCLNK
CXCR4: GSMEGISIXTSDNXTEEMGS GDXDSMKEPAFREENANFNK

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	1418
15N chemical shifts	211
13C chemical shifts	852

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Entity Assembly ID	Entity Name	Entity ID
1	CXCL12/SDF1-alpha_1	1
2	CXCR4_1	2
3	CXCL12/SDF1-alpha_2	1
4	CXCR4_2	2

1	GLY	MET	LYS	PRO	VAL	SER	LEU	SER	TYR	ARG
2	CYS	PRO	CYS	ARG	PHE	PHE	GLU	SER	HIS	VAL
3	ALA	ARG	ALA	ASN	VAL	LYS	HIS	LEU	LYS	ILE
4	LEU	ASN	THR	PRO	ASN	CYS	ALA	CYS	GLN	ILE
5	VAL	ALA	ARG	LEU	LYS	ASN	ASN	ASN	ARG	GLN
6	VAL	CYS	ILE	ASP	PRO	LYS	LEU	LYS	TRP	ILE
7	GLN	GLU	TYR	LEU	GLU	LYS	CYS	LEU	ASN	LYS

1	GLY	SER	MET	GLU	GLY	ILE	SER	ILE	TYS	THR
2	SER	ASP	ASN	TYS	THR	GLU	GLU	MET	GLY	SER
3	GLY	ASP	TYS	ASP	SER	MET	LYS	GLU	PRO	ALA
4	PHE	ARG	GLU	GLU	ASN	ALA	ASN	PHE	ASN	LYS

Name	Sample	Sample state	Sample conditions
3D_15N-separated_NOESY	sample_1	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample_1	isotropic	sample_conditions_1
3D_13C-separated_NOESY (AROMATIC)	sample_1	isotropic	sample_conditions_1
3D_13C-F1-filtered_13C-F3-separateded_NOESY	sample_1	isotropic	sample_conditions_1
3D_15N-separated_NOESY	sample_2	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample_2	isotropic	sample_conditions_1
3D_13C-separated_NOESY (AROMATIC)	sample_2	isotropic	sample_conditions_1
3D_13C-F1-filtered_13C-F3-separateded_NOESY	sample_2	isotropic	sample_conditions_1

BMRB	15633 15635 15636 16142 16143
PDB	1QG7 1SDF 2J7Z 2K01 2K03 2K04 2K05 2KEC 2KED 2SDF 3HP3 4UAI 2K05
DBJ	BAA28601 BAA28602 BAF85317 BAG11056 BAG34757
EMBL	CAG29279
GB	AAA97434 AAB39332 AAB39333 AAB40516 AAH39893
REF	NP_000600 NP_001009847 NP_001028106 NP_001029058 NP_001171605
SP	O62657 P48061

Biological Magnetic Resonance Data Bank

BMRB Entry 15637

Title: Structure of SDF1 in complex with the CXCR4 N-terminus containing sulfotyrosines at postitions 7, 12 and 21 PubMed: 18799424

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	MET	LYS	PRO	VAL	SER	LEU	SER	TYR	ARG
2	CYS	PRO	CYS	ARG	PHE	PHE	GLU	SER	HIS	VAL
3	ALA	ARG	ALA	ASN	VAL	LYS	HIS	LEU	LYS	ILE
4	LEU	ASN	THR	PRO	ASN	CYS	ALA	CYS	GLN	ILE
5	VAL	ALA	ARG	LEU	LYS	ASN	ASN	ASN	ARG	GLN
6	VAL	CYS	ILE	ASP	PRO	LYS	LEU	LYS	TRP	ILE
7	GLN	GLU	TYR	LEU	GLU	LYS	CYS	LEU	ASN	LYS

1	GLY	SER	MET	GLU	GLY	ILE	SER	ILE	TYS	THR
2	SER	ASP	ASN	TYS	THR	GLU	GLU	MET	GLY	SER
3	GLY	ASP	TYS	ASP	SER	MET	LYS	GLU	PRO	ALA
4	PHE	ARG	GLU	GLU	ASN	ALA	ASN	PHE	ASN	LYS

1	GLY	MET	LYS	PRO	VAL	SER	LEU	SER	TYR	ARG
2	CYS	PRO	CYS	ARG	PHE	PHE	GLU	SER	HIS	VAL
3	ALA	ARG	ALA	ASN	VAL	LYS	HIS	LEU	LYS	ILE
4	LEU	ASN	THR	PRO	ASN	CYS	ALA	CYS	GLN	ILE
5	VAL	ALA	ARG	LEU	LYS	ASN	ASN	ASN	ARG	GLN
6	VAL	CYS	ILE	ASP	PRO	LYS	LEU	LYS	TRP	ILE
7	GLN	GLU	TYR	LEU	GLU	LYS	CYS	LEU	ASN	LYS

1	GLY	SER	MET	GLU	GLY	ILE	SER	ILE	TYS	THR
2	SER	ASP	ASN	TYS	THR	GLU	GLU	MET	GLY	SER
3	GLY	ASP	TYS	ASP	SER	MET	LYS	GLU	PRO	ALA
4	PHE	ARG	GLU	GLU	ASN	ALA	ASN	PHE	ASN	LYS

1	GLY	MET	LYS	PRO	VAL	SER	LEU	SER	TYR	ARG
2	CYS	PRO	CYS	ARG	PHE	PHE	GLU	SER	HIS	VAL
3	ALA	ARG	ALA	ASN	VAL	LYS	HIS	LEU	LYS	ILE
4	LEU	ASN	THR	PRO	ASN	CYS	ALA	CYS	GLN	ILE
5	VAL	ALA	ARG	LEU	LYS	ASN	ASN	ASN	ARG	GLN
6	VAL	CYS	ILE	ASP	PRO	LYS	LEU	LYS	TRP	ILE
7	GLN	GLU	TYR	LEU	GLU	LYS	CYS	LEU	ASN	LYS

1	GLY	SER	MET	GLU	GLY	ILE	SER	ILE	TYS	THR
2	SER	ASP	ASN	TYS	THR	GLU	GLU	MET	GLY	SER
3	GLY	ASP	TYS	ASP	SER	MET	LYS	GLU	PRO	ALA
4	PHE	ARG	GLU	GLU	ASN	ALA	ASN	PHE	ASN	LYS