BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 15937

Title: Solution structure of the equine infectious anemia virus p9 gag protein   PubMed: 20015412

Deposition date: 2008-09-02 Original release date: 2010-01-22

Authors: Sharma, Alok; Bruns, Karsten; Roeder, Rene; Henklein, Peter; Votteler, Joerg; Wray, Victor; Sharma, Ulrich

Citation: Sharma, Alok; Bruns, Karsten; Roeder, Rene; Henklein, Peter; Votteler, Joerg; Wray, Victor; Schubert, Ulrich. "Solution structure of the equine infectious anemia virus p9 protein: a rationalization of its different ALIX binding requirements compared to the analogous HIV-p6 protein."  BMC Struct. Biol. 9, 74-74 (2009).

Assembly members:
p9_(22-51), polymer, 30 residues, Formula weight is not available

Natural source:   Common Name: HIV-1   Taxonomy ID: 11676   Superkingdom: Viruses   Kingdom: not available   Genus/species: Lentivirus Human immunodeficiency virus 1

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
p9_(22-51): LYPDLSEIKKEYNVKEKDQV EDLNLDSLWE

Data sets:
Data typeCount
1H chemical shifts242

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1p9 (22-51)1

Entities:

Entity 1, p9 (22-51) 30 residues - Formula weight is not available

1   LEUTYRPROASPLEUSERGLUILELYSLYS
2   GLUTYRASNVALLYSGLULYSASPGLNVAL
3   GLUASPLEUASNLEUASPSERLEUTRPGLU

Samples:

sample_1: p9 (22-51) 2-3 mM

sample_conditions_1: pH: 3; pressure: 1 atm; temperature: 300 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

AURELIA, Neidig, Geyer, Gorler, Antz, Saffrich, Beneicke, Kalbitzer - chemical shift assignment

NMR spectrometers:

  • Bruker DMX 600 MHz

Related Database Links:

PDB
GB AAA43003 AAA43011 AAB59861 AAC03760 AAC24014
REF NP_056901
SP P69730 P69731 P69732