BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 16166

Title: 1H, 15N and 13C backbone resonance assignments of domain 3 of the non-structural 5A (NS5A) protein from Hepatitis C Virus (Con1)   PubMed: 19249289

Deposition date: 2009-02-11 Original release date: 2009-03-20

Authors: Hanoulle, Xavier; Verdegem, Dries; Badillo, Aurelie; Wieruszeski, Jean-Michel; Penin, Francois; Lippens, Guy

Citation: Hanoulle, Xavier; Verdegem, Dries; Badillo, Aurelie; Wieruszeski, Jean-Michel; Penin, Francois; Lippens, Guy. "Domain 3 of non structural protein 5A from hepatitis C virus is natively unfolded"  Biochem. Biophys. Res. Commun. ., 634-638 (2009).

Assembly members:
HCV_(Con1)_NS5A-D3, polymer, 96 residues, Formula weight is not available

Natural source:   Common Name: Hepatitis C Virus   Taxonomy ID: 11103   Superkingdom: Hepatitis C Virus   Kingdom: not available   Genus/species: Hepacivirus Hepatitis C Virus

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
HCV_(Con1)_NS5A-D3: MRTVVLSESTVSSALAELAT KTFGSSESSAVDSGTATASP DQPSDDGDAGSDVESYSSMP PLEGEPGDPDLSDGSWSTVS EEASEDVVLQHHHHHH

Data sets:
Data typeCount
13C chemical shifts257
15N chemical shifts82
1H chemical shifts82

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1NS5A-D31

Entities:

Entity 1, NS5A-D3 96 residues - Formula weight is not available

The first Methionine residue is a cloning artifact. The last 8 residues represent a non-native affinity tag. This is the domain 3 of the HCV (Con1, genotype 1b) NS5A protein.

1   METARGTHRVALVALLEUSERGLUSERTHR
2   VALSERSERALALEUALAGLULEUALATHR
3   LYSTHRPHEGLYSERSERGLUSERSERALA
4   VALASPSERGLYTHRALATHRALASERPRO
5   ASPGLNPROSERASPASPGLYASPALAGLY
6   SERASPVALGLUSERTYRSERSERMETPRO
7   PROLEUGLUGLYGLUPROGLYASPPROASP
8   LEUSERASPGLYSERTRPSERTHRVALSER
9   GLUGLUALASERGLUASPVALVALLEUGLN
10   HISHISHISHISHISHIS

Samples:

sample_1: HCV (Con1) NS5A-D3, [U-95% 13C; U-98% 15N], 440 uM; sodium phosphate 20 mM; sodium chloride 30 mM; THP 1 mM; sodium azide 0.02%; D2O 5%; H2O 95%

sample_conditions_1: ionic strength: 30 mM; pH: 6.4; pressure: 1.0 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCACOsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCANNHsample_1isotropicsample_conditions_1

Software:

TOPSPIN v1.3, Bruker Biospin - collection, processing

In_house_product_plane_algorithm, Dries Verdegem & Guy Lippens - chemical shift assignment, data analysis

NMR spectrometers:

  • Bruker Avance 800 MHz

Related Database Links:

Swiss-Prot Q9WMX2
Genbank AJ238799
euHCVdb AJ238799
BMRB 16800
DBJ BAD73972 BAD73974 BAD73975 BAD73984 BAD73985
EMBL CAB46677 CAB46911 CAB46913 CAB46915 CAB46917
GB AAL55821 AAY23099 AAY23100 AAY23101 AAY23102
SP Q9WMX2

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts