BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 16246

Title: Resonance Assignments for Yeast Prp24-RRM2   PubMed: 19693704

Deposition date: 2009-04-07 Original release date: 2009-09-04

Authors: Martin-Tumasz, Stephen; Reiter, Nicholas; Butcher, Samuel

Citation: Martin-Tumasz, Stephen; Butcher, Samuel. "(1)H, (13)C and (15)N resonance assignments of a ribonucleoprotein complex consisting of Prp24-RRM2 bound to a fragment of U6 RNA."  Biomol. NMR Assignments 3, 227-230 (2009).

Assembly members:
Prp24-RRM2, polymer, 92 residues, 10012.586 Da.

Natural source:   Common Name: baker   Taxonomy ID: 4932   Superkingdom: not available   Kingdom: not available   Genus/species: Eukaryota Fungi

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
Prp24-RRM2: MTECTLWMTNFPPSYTQRNI RDLLQDINVVALSIRLPSLR FNTSRRFAYIDVTSKEDARY CVEKLNGLKIEGYTLVTKVS NPLELEHHHHHH

Data sets:
Data typeCount
13C chemical shifts257
15N chemical shifts83
1H chemical shifts522

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Prp24-RRM21

Entities:

Entity 1, Prp24-RRM2 92 residues - 10012.586 Da.

Final 8 residues are non-native due to 6x His tag

1   METTHRGLUCYSTHRLEUTRPMETTHRASN
2   PHEPROPROSERTYRTHRGLNARGASNILE
3   ARGASPLEULEUGLNASPILEASNVALVAL
4   ALALEUSERILEARGLEUPROSERLEUARG
5   PHEASNTHRSERARGARGPHEALATYRILE
6   ASPVALTHRSERLYSGLUASPALAARGTYR
7   CYSVALGLULYSLEUASNGLYLEULYSILE
8   GLUGLYTYRTHRLEUVALTHRLYSVALSER
9   ASNPROLEUGLULEUGLUHISHISHISHIS
10   HISHIS

Samples:

Fully_Labeled: Prp24-RRM2, [U-99% 13C; U-99% 15N], 500 mM; TRIS 10 mM; potassium chloride 50 mM; DTT 1 mM; H2O 90%; D2O 10%

Referencing: Prp24-RRM2, [U-99% 13C; U-99% 15N], 500 uM; TRIS 10 mM; potassium chloride 50 mM; DTT 1 mM; DSS 10 uM

sample_conditions_1: ionic strength: 50 mM; pH: 7; pressure: 1 atm; temperature: 298.15 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCFully_Labeledisotropicsample_conditions_1
3D CBCA(CO)NHFully_Labeledisotropicsample_conditions_1
3D C(CO)NHFully_Labeledisotropicsample_conditions_1
3D HNCOFully_Labeledisotropicsample_conditions_1
3D HNCACBFully_Labeledisotropicsample_conditions_1
3D HBHA(CO)NHFully_Labeledisotropicsample_conditions_1
3D HCCH-TOCSYFully_Labeledisotropicsample_conditions_1
3D H(CCO)NHFully_Labeledisotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY, Goddard - chemical shift assignment, peak picking

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

BMRB 16230 16243 16244
PDB
DBJ GAA25719
EMBL CAA89251 CAY82100
GB AAU09775 AHY76723 AJP40962 AJS62134 AJS62569
REF NP_013995
SP P49960
TPG DAA10168

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts