BMRB Entry 16395
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16395
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Title: Assignments of M.HhaI bound with hemimethylated DNA PubMed: 19580326
Deposition date: 2009-07-07 Original release date: 2009-09-04
Authors: Zhou, Hongjun; Murdy, Matthew; Dahlquist, Frederick; Reich, Norbert
Citation: Zhou, Hongjun; Murdy, Matthew; Dahlquist, Frederick; Reich, Norbert. "The recognition Pathway for the DNA Cytosine Methyltransferase M.HhaI" Biochemistry 48, 7807-7816 (2009).
Assembly members:
M.HhaI, polymer, 331 residues, Formula weight is not available
Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 557 |
| 15N chemical shifts | 276 |
| 1H chemical shifts | 276 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | protein | 1 |
Entities:
Entity 1, protein 331 residues - Formula weight is not available
| 1 | MET | ILE | GLU | ILE | LYS | ASP | LYS | GLN | LEU | THR | ||||
| 2 | GLY | LEU | ARG | PHE | ILE | ASP | LEU | PHE | ALA | GLY | ||||
| 3 | LEU | GLY | GLY | PHE | ARG | LEU | ALA | LEU | GLU | SER | ||||
| 4 | CYS | GLY | ALA | GLU | CYS | VAL | TYR | SER | ASN | GLU | ||||
| 5 | TRP | ASP | LYS | TYR | ALA | GLN | GLU | VAL | TYR | GLU | ||||
| 6 | MET | ASN | PHE | GLY | GLU | LYS | PRO | GLU | GLY | ASP | ||||
| 7 | ILE | THR | GLN | VAL | ASN | GLU | LYS | THR | ILE | PRO | ||||
| 8 | ASP | HIS | ASP | ILE | LEU | CYS | ALA | GLY | PHE | PRO | ||||
| 9 | CYS | GLN | ALA | PHE | SER | ILE | SER | GLY | LYS | GLN | ||||
| 10 | LYS | GLY | PHE | GLU | ASP | SER | ARG | GLY | THR | LEU | ||||
| 11 | PHE | PHE | ASP | ILE | ALA | ARG | ILE | VAL | ARG | GLU | ||||
| 12 | LYS | LYS | PRO | LYS | VAL | VAL | PHE | MET | GLU | ASN | ||||
| 13 | VAL | LYS | ASN | PHE | ALA | SER | HIS | ASP | ASN | GLY | ||||
| 14 | ASN | THR | LEU | GLU | VAL | VAL | LYS | ASN | THR | MET | ||||
| 15 | ASN | GLU | LEU | ASP | TYR | SER | PHE | HIS | ALA | LYS | ||||
| 16 | VAL | LEU | ASN | ALA | LEU | ASP | TYR | GLY | ILE | PRO | ||||
| 17 | GLN | LYS | ARG | GLU | ARG | ILE | TYR | MET | ILE | CYS | ||||
| 18 | PHE | ARG | ASN | ASP | LEU | ASN | ILE | GLN | ASN | PHE | ||||
| 19 | GLN | PHE | PRO | LYS | PRO | PHE | GLU | LEU | ASN | THR | ||||
| 20 | PHE | VAL | LYS | ASP | LEU | LEU | LEU | PRO | ASP | SER | ||||
| 21 | GLU | VAL | GLU | HIS | LEU | VAL | ILE | ASP | ARG | LYS | ||||
| 22 | ASP | LEU | VAL | MET | THR | ASN | GLN | GLU | ILE | GLU | ||||
| 23 | GLN | THR | THR | PRO | LYS | THR | VAL | ARG | LEU | GLY | ||||
| 24 | ILE | VAL | GLY | LYS | GLY | GLY | GLN | GLY | GLU | ARG | ||||
| 25 | ILE | TYR | SER | THR | ARG | GLY | ILE | ALA | ILE | THR | ||||
| 26 | LEU | SER | ALA | TYR | GLY | GLY | GLY | ILE | PHE | ALA | ||||
| 27 | LYS | THR | GLY | GLY | TYR | LEU | VAL | ASN | GLY | LYS | ||||
| 28 | THR | ARG | LYS | LEU | HIS | PRO | ARG | GLU | CYS | ALA | ||||
| 29 | ARG | VAL | MET | GLY | TYR | PRO | ASP | SER | TYR | LYS | ||||
| 30 | VAL | HIS | PRO | SER | THR | SER | GLN | ALA | TYR | LYS | ||||
| 31 | GLN | PHE | GLY | ASN | SER | VAL | VAL | ILE | ASN | VAL | ||||
| 32 | LEU | GLN | TYR | ILE | ALA | TYR | ASN | ILE | GLY | SER | ||||
| 33 | SER | LEU | ASN | LEU | GLU | HIS | HIS | HIS | HIS | HIS | ||||
| 34 | HIS |
Samples:
sample_1: M.HhaI, [U-13C; U-15N; U-2H], 0.5 mM; H2O 90%; D2O 10%; NaCl 100 mM; NaPi 50 mM; glycerol 0.75%; arg 50 mM; Glu 50 mM
sample_conditions_1: ionic strength: 100 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
Software:
ANSIG, Kraulis - chemical shift assignment
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMR spectrometers:
- Varian INOVA 600 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts