BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 16813

Title: Solution NMR structure of the parkin Ubl domain in complex with the endophilin-A1 SH3 domain   PubMed: 20064468

Deposition date: 2010-03-31 Original release date: 2010-05-19

Authors: Trempe, Jean-Francois; Guennadi, Kozlov; Edna, Camacho; Kalle, Gehring

Citation: Trempe, Jean-Francois; Chen, Carol X-Q; Grenier, Karl; Camacho, Edna Matta; Kozlov, Guennadi; McPherson, Peter; Gehring, Kalle; Fon, Edward. "SH3 domains from a subset of BAR proteins define a Ubl-binding domain and implicate parkin in synaptic ubiquitination."  Mol. Cell 36, 1034-1047 (2009).

Assembly members:
Ubl, polymer, 81 residues, 8738.083 Da.
SH3, polymer, 71 residues, 7121.919 Da.

Natural source:   Common Name: Norway rat   Taxonomy ID: 10116   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Rattus norvegicus

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
Ubl: GPLGSMIVFVRFNSSYGFPV EVDSDTSIFQLKEVVAKRQG VPADQLRVIFAGKELQNHLT VQNCDLEQQSIVHIVQRPQR K
SH3: GSRRASVGSDQPCCRALYDF EPENEGELGFKEGDIITLTN QIDENWYEGMLHGQSGFFPI NYVEILVALPH

Data sets:
Data typeCount
13C chemical shifts406
15N chemical shifts150
1H chemical shifts833

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Related Database Links:

PDB 2KNB 4K95 4ZYN 3IQL
DBJ BAA92431 BAC31888 BAE22364 BAE23963
GB AAF34874 AAF68666 AAG37013 AAM21453 AAM21456 AAH18385 AAI23533 AAL37407 AAL37408 AIL95726
REF NP_064478 NP_001070308 NP_062408 XP_001925192 XP_002920770 XP_003783082
SP Q9JK66 Q62420
TPG DAA26952

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts