BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 16878

Title: NMR Structure of AIRE PHD Finger   PubMed: 19446523

Deposition date: 2010-04-18 Original release date: 2010-07-27

Authors: Chakravarty, Suvobrata; Zeng, Lei; ZHOU, MING-MING

Citation: Chakravarty, Suvobrata; Zeng, Lei; Zhou, Ming-Ming. "Structure and site-specific recognition of histone H3 by the PHD finger of human autoimmune regulator."  Structure 17, 670-679 (2009).

Assembly members:
AIRE_PHD_finger_1, polymer, 56 residues, 6019.845 Da.
Histone_H3_1-20Cys, polymer, 21 residues, 2293.733 Da.
ZN, non-polymer, 65.409 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
AIRE_PHD_finger_1: GSKNEDECAVCRDGGELICC DGCPRAFHLACLSPPLREIP SGTWRCSSCLQATVQE
Histone_H3_1-20Cys: ARTKQTARKSTGGKAPRKQL C

Data sets:
Data typeCount
13C chemical shifts163
15N chemical shifts47
1H chemical shifts318

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1AIRE_PHD_finger_11
2Histone_H3_1-20Cys2
3ZINC_13
4ZINC_23

Entities:

Entity 1, AIRE_PHD_finger_1 56 residues - 6019.845 Da.

1   GLYSERLYSASNGLUASPGLUCYSALAVAL
2   CYSARGASPGLYGLYGLULEUILECYSCYS
3   ASPGLYCYSPROARGALAPHEHISLEUALA
4   CYSLEUSERPROPROLEUARGGLUILEPRO
5   SERGLYTHRTRPARGCYSSERSERCYSLEU
6   GLNALATHRVALGLNGLU

Entity 2, Histone_H3_1-20Cys 21 residues - 2293.733 Da.

1   ALAARGTHRLYSGLNTHRALAARGLYSSER
2   THRGLYGLYLYSALAPROARGLYSGLNLEU
3   CYS

Entity 3, ZINC_1 - Zn - 65.409 Da.

1   ZN

Samples:

sample_1: AIRE PHD finger 1, [U-100% 15N], 0.5 mM; phosphate buffer 10 mM; NaCl 250 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 250 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1
3D HN(COCA)CBsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

ARIA v2.2, Linge, O'Donoghue and Nilges - data analysis

CNS v1.0, Brunger, Adams, Clore, Gros, Nilges and Read - structure solution

NMR spectrometers:

  • Bruker DRX 800 MHz

Related Database Links:

. NP_000374
PDB
DBJ BAA23988 BAA23989 BAA23990 BAA23991 BAA23992 BAB27616 BAG57022 GAC74844
EMBL CAA08759 CAB10790 CAG04369 CAG11543 CAP39588 CAP53898 CAP72538
GB AAI37269 AAI37271 AIC54015 EAX09441 EAX09442 AAH67493 AAR37358 AAT97343 AAT97344 AAX52110
REF NP_000374 XP_003419041 XP_004062941 XP_006876868 XP_008975805 NP_001281095 XP_001061048 XP_001249529 XP_001712222 XP_002029274
SP O43918
BMRB 11358 16694
TPG DAA24942 DAA45649

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts