BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 16936

Title: Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target methylated DNA sequence   PubMed: 21531701

Deposition date: 2010-05-18 Original release date: 2011-06-21

Authors: Williams, David; Scarsdale, Joe

Citation: Scarsdale, J. Neel; Webb, Heather; Ginder, Gordon; Williams, David. "Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence."  Nucleic Acids Res. 39, 6741-6752 (2011).

Assembly members:
cMBD2, polymer, 72 residues, 7861.131 Da.
DNA-strand_1, polymer, 11 residues, 2794.885 Da.
DNA-strand_2, polymer, 11 residues, 3044.045 Da.
MN, non-polymer, 54.938 Da.

Natural source:   Common Name: chicken   Taxonomy ID: 9031   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Gallus gallus

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
cMBD2: GSDKQGRTDCPALPPGWKKE EVIRKSGLSAGKSDVYYFSP SGKKFRSKPQLARYLGNAVD LSCFDFRTGKMM
DNA-strand_1: GGAATXGGCXC
DNA-strand_2: GAGCXGATXCC

Data sets:
Data typeCount
13C chemical shifts307
15N chemical shifts70
1H chemical shifts582

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Related Database Links:

GB NP_001012403 AAC68872 AAC68874 AAD50372 AAD50373 AAH46607
PDB 2KY8
REF NP_001012403 NP_001108497 NP_001298000 NP_034903 XP_005074763
SP Q9Z2E1

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts