BMRB Entry 17126
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17126
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Title: NMR assigment of Heparanase construct Hep158-417
Deposition date: 2010-08-13 Original release date: 2010-09-02
Authors: Mosulen Machuca, Silvia; Orti, Leticia; Bas, Esperanza; Carbajo, Rodrigo; Pineda-Lucena, Antonio
Citation: Mosulen Machuca, Silvia; Orti, Leticia; Bas, Esperanza; Carbajo, Rodrigo; Pineda-Lucena, Antonio. "Assigned Chemical Shifts for Heparanase 158-417" Not known ., .-..
Assembly members:
HEP158-417, polymer, 282 residues, Formula weight is not available
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
HEP158-417: GSSHHHHHHSSGRENLYFQG
HMKKFKNSTYSRSSVDVLYT
FANCSGLDLIFGLNALLRTA
DLQWNSSNAQLLLDYCSSKG
YNISWELGNEPNSFLKKADI
FINGSQLGEDFIQLHKLLRK
STFKNAKLYGPDVGQPRRKT
AKMLKSFLKAGGEVIDSVTW
HHYYLNGRTATREDFLNPDV
LDIFISSVQKVFQVVESTRP
GKKVWLGETSSAYGGGAPLL
SDTFAAGFMWLDKLGLSARM
GIEVVMRQVFFGAGNYHLVD
ENFDPLPDYWLSLLFKKLVG
TK
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 808 |
15N chemical shifts | 258 |
1H chemical shifts | 1645 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | subunit 1 | 1 |
Entities:
Entity 1, subunit 1 282 residues - Formula weight is not available
Residues at the N-term GSSHHHHHHSSGRENLYFQGHM correspond to an affinity tag and their chemical shifts are not reported
1 | GLY | SER | SER | HIS | HIS | HIS | HIS | HIS | HIS | SER | ||||
2 | SER | GLY | ARG | GLU | ASN | LEU | TYR | PHE | GLN | GLY | ||||
3 | HIS | MET | LYS | LYS | PHE | LYS | ASN | SER | THR | TYR | ||||
4 | SER | ARG | SER | SER | VAL | ASP | VAL | LEU | TYR | THR | ||||
5 | PHE | ALA | ASN | CYS | SER | GLY | LEU | ASP | LEU | ILE | ||||
6 | PHE | GLY | LEU | ASN | ALA | LEU | LEU | ARG | THR | ALA | ||||
7 | ASP | LEU | GLN | TRP | ASN | SER | SER | ASN | ALA | GLN | ||||
8 | LEU | LEU | LEU | ASP | TYR | CYS | SER | SER | LYS | GLY | ||||
9 | TYR | ASN | ILE | SER | TRP | GLU | LEU | GLY | ASN | GLU | ||||
10 | PRO | ASN | SER | PHE | LEU | LYS | LYS | ALA | ASP | ILE | ||||
11 | PHE | ILE | ASN | GLY | SER | GLN | LEU | GLY | GLU | ASP | ||||
12 | PHE | ILE | GLN | LEU | HIS | LYS | LEU | LEU | ARG | LYS | ||||
13 | SER | THR | PHE | LYS | ASN | ALA | LYS | LEU | TYR | GLY | ||||
14 | PRO | ASP | VAL | GLY | GLN | PRO | ARG | ARG | LYS | THR | ||||
15 | ALA | LYS | MET | LEU | LYS | SER | PHE | LEU | LYS | ALA | ||||
16 | GLY | GLY | GLU | VAL | ILE | ASP | SER | VAL | THR | TRP | ||||
17 | HIS | HIS | TYR | TYR | LEU | ASN | GLY | ARG | THR | ALA | ||||
18 | THR | ARG | GLU | ASP | PHE | LEU | ASN | PRO | ASP | VAL | ||||
19 | LEU | ASP | ILE | PHE | ILE | SER | SER | VAL | GLN | LYS | ||||
20 | VAL | PHE | GLN | VAL | VAL | GLU | SER | THR | ARG | PRO | ||||
21 | GLY | LYS | LYS | VAL | TRP | LEU | GLY | GLU | THR | SER | ||||
22 | SER | ALA | TYR | GLY | GLY | GLY | ALA | PRO | LEU | LEU | ||||
23 | SER | ASP | THR | PHE | ALA | ALA | GLY | PHE | MET | TRP | ||||
24 | LEU | ASP | LYS | LEU | GLY | LEU | SER | ALA | ARG | MET | ||||
25 | GLY | ILE | GLU | VAL | VAL | MET | ARG | GLN | VAL | PHE | ||||
26 | PHE | GLY | ALA | GLY | ASN | TYR | HIS | LEU | VAL | ASP | ||||
27 | GLU | ASN | PHE | ASP | PRO | LEU | PRO | ASP | TYR | TRP | ||||
28 | LEU | SER | LEU | LEU | PHE | LYS | LYS | LEU | VAL | GLY | ||||
29 | THR | LYS |
Samples:
sample_1: HEP158-417, [U-100% 15N], 900 uM; sodium chloride 50 mM; sodium phosphate 25 mM; N-Lauroyl-sarcosine 0.125%; H2O 95%; D2O 5%
sample_2: HEP158-417, [U-99% 13C; U-99% 15N], 900 uM; sodium chloride 50 mM; sodium phosphate 25 mM; N-Lauroyl-sarcosine 0.125%; H2O 95%; D2O 5%
sample_3: HEP158-417, [U-100% 13C; U-100% 15N; U-80% 2H], 900 uM; sodium chloride 50 mM; sodium phosphate 25 mM; N-Lauroyl-sarcosine 0.125%; H2O 95%; D2O 5%
sample_4: HEP158-417 900 uM; sodium chloride 50 mM; sodium phosphate 25 mM; N-Lauroyl-sarcosine 0.125%; H2O 95%; D2O 5%
sample_conditions_1: ionic strength: 0.1 M; pH: 6; pressure: 1 atm; temperature: 318 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
2D 1H-13C HSQC | sample_4 | isotropic | sample_conditions_1 |
3D HNCO | sample_3 | isotropic | sample_conditions_1 |
3D HNCA | sample_3 | isotropic | sample_conditions_1 |
3D HNCACB | sample_2 | isotropic | sample_conditions_1 |
3D HBHA(CO)NH | sample_2 | isotropic | sample_conditions_1 |
3D CBCA(CO)NH | sample_3 | isotropic | sample_conditions_1 |
3D HCCH-TOCSY | sample_4 | isotropic | sample_conditions_1 |
3D HNHA | sample_2 | isotropic | sample_conditions_1 |
3D HNHB | sample_2 | isotropic | sample_conditions_1 |
3D 1H-15N TOCSY | sample_1 | isotropic | sample_conditions_1 |
3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
3D 1H-13C NOESY | sample_4 | isotropic | sample_conditions_1 |
3D HCACO | sample_3 | isotropic | sample_conditions_1 |
Software:
TOPSPIN, Bruker Biospin - processing
CARA, Keller and Wuthrich - chemical shift assignment
NMR spectrometers:
- Bruker Avance 600 MHz
- Bruker Avance 900 MHz
Related Database Links:
GB | AAD41342 AAD45379 AAD45669 AAD54516 AAD54941 |
REF | XP_007997297 XP_011765811 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts