BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 17276

Title: Unbound TbRI-ED   PubMed: 21821041

Deposition date: 2010-11-02 Original release date: 2011-10-28

Authors: Zuniga, Jorge; Ilangovan, Udayar; Pardeep, Mahlawat; Hinck, Cynthia; Huang, Tao

Citation: Zuniga, Jorge; Ilangovan, Udayar; Mahlawat, Pardeep; Hinck, Cynthia; Huang, Tao; Groppe, Jay; McEwen, Donald; Hinck, Andrew. "The TR-I pre-helix extension is structurally ordered in the unbound form and its flanking prolines are essential for binding."  J. Mol. Biol. 412, 601-618 (2011).

Assembly members:
TbRI, polymer, 87 residues, 9465.8 Da.

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
TbRI: GSATALQCFCHLCTKDNFTC VTDGLCFVSVTETTDKVIHN SMCIAEIDLIPRDRPFVCAP SSKTGSVTTTYCCNQDHCNK IELPTTV

Data sets:
Data typeCount
13C chemical shifts247
15N chemical shifts85
1H chemical shifts529

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1unbound Alk5 ectodomain1

Entities:

Entity 1, unbound Alk5 ectodomain 87 residues - 9465.8 Da.

1   GLYSERALATHRALALEUGLNCYSPHECYS
2   HISLEUCYSTHRLYSASPASNPHETHRCYS
3   VALTHRASPGLYLEUCYSPHEVALSERVAL
4   THRGLUTHRTHRASPLYSVALILEHISASN
5   SERMETCYSILEALAGLUILEASPLEUILE
6   PROARGASPARGPROPHEVALCYSALAPRO
7   SERSERLYSTHRGLYSERVALTHRTHRTHR
8   TYRCYSCYSASNGLNASPHISCYSASNLYS
9   ILEGLULEUPROTHRTHRVAL

Samples:

sample_1: TbRI, [U-100% 13C; U-100% 15N], 1 mM; H2O 95%; D2O 5%; Sodium phosphate 25 mM

sample_conditions_1: ionic strength: 0.025 M; pH: 7.2; pressure: 1 atm; temperature: 300 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1

Software:

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - structure solution

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

PDB
DBJ BAD91020 BAD91021 BAD91022 BAD91023 BAG10679
EMBL CAF02096 CAF02097
GB AAA16073 AAA80265 AAC08998 AAD02042 AAH71181
REF NP_001033728 NP_001124388 NP_001293139 NP_004603 XP_001112590
SP P36897 Q5CD18

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts