BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 17428

Title: AIDA1 PTB domain

Deposition date: 2011-01-25 Original release date: 2012-08-14

Authors: Donaldson, Logan

Citation: Donaldson, Logan. "Improving protein solubility by aromatic ablation"  J. Biomol. NMR ., .-..

Assembly members:
AIDA1, polymer, 189 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
AIDA1: HHHHHHLVPRGSGYENPTYK FFETLRPPNEATALQTPVQA WQHHPEKLIAQSCDYKAAYL GSMLIKELRGTESTQDACAK MRANCQKSTEQMKKVPTIIL SVSAKGVKFIDATNKNIIAE HEIRNISCAAQDPEDLSTFA YITKDLKSNHHYCHVFTAFD VNLAAEIILTLGQAFEVAYQ LALQARKLE

Data sets:
Data typeCount
13C chemical shifts568
15N chemical shifts134
1H chemical shifts860

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PTB domain1

Entities:

Entity 1, PTB domain 189 residues - Formula weight is not available

1   HISHISHISHISHISHISLEUVALPROARG
2   GLYSERGLYTYRGLUASNPROTHRTYRLYS
3   PHEPHEGLUTHRLEUARGPROPROASNGLU
4   ALATHRALALEUGLNTHRPROVALGLNALA
5   TRPGLNHISHISPROGLULYSLEUILEALA
6   GLNSERCYSASPTYRLYSALAALATYRLEU
7   GLYSERMETLEUILELYSGLULEUARGGLY
8   THRGLUSERTHRGLNASPALACYSALALYS
9   METARGALAASNCYSGLNLYSSERTHRGLU
10   GLNMETLYSLYSVALPROTHRILEILELEU
11   SERVALSERALALYSGLYVALLYSPHEILE
12   ASPALATHRASNLYSASNILEILEALAGLU
13   HISGLUILEARGASNILESERCYSALAALA
14   GLNASPPROGLUASPLEUSERTHRPHEALA
15   TYRILETHRLYSASPLEULYSSERASNHIS
16   HISTYRCYSHISVALPHETHRALAPHEASP
17   VALASNLEUALAALAGLUILEILELEUTHR
18   LEUGLYGLNALAPHEGLUVALALATYRGLN
19   LEUALALEUGLNALAARGLYSLEUGLU

Samples:

sample_1: AIDA1, [U-99% 13C; U-99% 15N], 0.6 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 0.15 M; pH: 7.8; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1

Software:

NMRView, Johnson, One Moon Scientific - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 900 MHz
  • Varian NMRS 600 MHz

Related Database Links:

BMRB 17934
PDB
DBJ BAE87950
GB EDL21516 EDL21517 EDL21518 EDM16964 EDM16965
REF XP_003126745 XP_005658157 XP_006077488 XP_013846696

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts