BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 17469

Title: Quantitative NMR spectroscopy of supramolecular complexes: Dynamic side pores in ClpP are important for product release   PubMed: 16263929

Deposition date: 2011-02-14 Original release date: 2012-05-22

Authors: Sprangers, Remco; Gribun, Anna; Hwang, Peter; Houry, Walid; Kay, Lewis

Citation: Sprangers, Remco; Gribun, Anna; Hwang, Peter; Houry, Walid; Kay, Lewis. "Quantitative NMR spectroscopy of supramolecular complexes: dynamic side pores in ClpP are important for product release."  Proc. Natl. Acad. Sci. U.S.A. 102, 16678-16683 (2005).

Assembly members:
ClpP, polymer, 207 residues, Formula weight is not available

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:   Production method: purified from the natural source   Host organism: Escherichia coli

Entity Sequences (FASTA):
ClpP: MSYSGERDNFAPHMALVPMV IEQTSRGERSFDIYSRLLKE RVIFLTGQVEDHMANLIVAQ MLFLEAENPEKDIYLYINSP GGVITAGMSIYDTMQFIKPD VSTICMGQAASMGAFLLTAG AKGKRFCLPNSRVMIHQPLG GYQGQATDIEIHAREILKVK GRMNELMALHTGQSLEQIER DTERDRFLSAPEAVEYGLVD SILTHRN

Data sets:
Data typeCount
kinetic rates2

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1ClpP1

Entities:

Entity 1, ClpP 207 residues - Formula weight is not available

1   METSERTYRSERGLYGLUARGASPASNPHE
2   ALAPROHISMETALALEUVALPROMETVAL
3   ILEGLUGLNTHRSERARGGLYGLUARGSER
4   PHEASPILETYRSERARGLEULEULYSGLU
5   ARGVALILEPHELEUTHRGLYGLNVALGLU
6   ASPHISMETALAASNLEUILEVALALAGLN
7   METLEUPHELEUGLUALAGLUASNPROGLU
8   LYSASPILETYRLEUTYRILEASNSERPRO
9   GLYGLYVALILETHRALAGLYMETSERILE
10   TYRASPTHRMETGLNPHEILELYSPROASP
11   VALSERTHRILECYSMETGLYGLNALAALA
12   SERMETGLYALAPHELEULEUTHRALAGLY
13   ALALYSGLYLYSARGPHECYSLEUPROASN
14   SERARGVALMETILEHISGLNPROLEUGLY
15   GLYTYRGLNGLYGLNALATHRASPILEGLU
16   ILEHISALAARGGLUILELEULYSVALLYS
17   GLYARGMETASNGLULEUMETALALEUHIS
18   THRGLYGLNSERLEUGLUGLNILEGLUARG
19   ASPTHRGLUARGASPARGPHELEUSERALA
20   PROGLUALAVALGLUTYRGLYLEUVALASP
21   SERILELEUTHRHISARGASN

Samples:

sample_1: ClpP0.3 – 0.5 mM; potassium phosphate 50 mM; DTT 1 mM; sodium azide 0.03%; D2O 100%

sample_conditions_1: pH: 6.8; pressure: 1 atm; temperature: 273.65 K

Experiments:

NameSampleSample stateSample conditions
Methyl TROSY relaxation dispersionsample_1isotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Varian INOVA 600 MHz
  • Varian INOVA 800 MHz

Related Database Links:

PDB
DBJ BAA94668 BAB33914 BAE76217 BAG75987 BAH62053
EMBL CAD08907 CAP74971 CAQ30909 CAQ90075 CAQ97313
GB AAA23588 AAB40193 AAC73540 AAG54787 AAL19403
PIR AC0558
REF NP_308518 NP_414971 NP_455045 NP_459444 NP_706331
SP A1A8A6 A7ZIJ5 A7ZX95 B1J011 B4SWU1