BMRB Entry 17761
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17761
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Title: Backbone 1H, 13C, 15N and 13CB assignment of N-terminal Domain of Ribosomal Protein L9 (NTL9) Denatured State in 8.3M Urea PubMed: 21915914
Deposition date: 2011-07-05 Original release date: 2012-09-20
Authors: Meng, Wenli; Raleigh, Daniel
Citation: Meng, Wenli; Raleigh, Daniel. "Analysis of electrostatic interactions in the denatured state ensemble of the N-terminal domain of L9 under native conditions." Proteins 79, 3500-3510 (2011).
Assembly members:
N-terminal Domain of the Ribosomal Protein L9, polymer, 56 residues, Formula weight is not available
Natural source: Common Name: Geobacillus stearothermophilus Taxonomy ID: 1422 Superkingdom: Bacteria Kingdom: not available Genus/species: Geobacillus stearothermophilus
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
N-terminal Domain of the Ribosomal Protein L9: MKVIFLKDVKGKGKKGEIKN
VADGYANNFLFKQGLAIEAT
PANLKALEAQKQKEQR
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 161 |
| 15N chemical shifts | 54 |
| 1H chemical shifts | 108 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | N-terminal Domain of the Ribosomal Protein L9 | 1 |
Entities:
Entity 1, N-terminal Domain of the Ribosomal Protein L9 56 residues - Formula weight is not available
| 1 | MET | LYS | VAL | ILE | PHE | LEU | LYS | ASP | VAL | LYS | ||||
| 2 | GLY | LYS | GLY | LYS | LYS | GLY | GLU | ILE | LYS | ASN | ||||
| 3 | VAL | ALA | ASP | GLY | TYR | ALA | ASN | ASN | PHE | LEU | ||||
| 4 | PHE | LYS | GLN | GLY | LEU | ALA | ILE | GLU | ALA | THR | ||||
| 5 | PRO | ALA | ASN | LEU | LYS | ALA | LEU | GLU | ALA | GLN | ||||
| 6 | LYS | GLN | LYS | GLU | GLN | ARG |
Samples:
sample_1: sodium chloride 100 mM; sodium acetate 20 mM; urea 8.3 M; DSS 0.4 mM; N-terminal Domain of the Ribosomal Protein L9, [U-100% 13C; U-100% 15N], 1 mM; H2O 90%; D2O 10%
sample_2: sodium chloride 100 mM; sodium acetate 20 mM; urea 8.3 M; DSS 0.4 mM; N-terminal Domain of the Ribosomal Protein L9, [U-100% 15N], 1 mM; H2O 90%; D2O 10%
sample_conditions_1: ionic strength: 0.12 M; pH: 5.5; pressure: 1 atm; temperature: 285 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-15N HSQC | sample_2 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N TOCSY | sample_2 | isotropic | sample_conditions_1 |
Software:
NMRView, Johnson, One Moon Scientific - chemical shift assignment
NMR spectrometers:
- Bruker Avance 500 MHz
Related Database Links:
| BMRB | 17460 17506 4551 |
| PDB | |
| EMBL | CAA43972 |
| GB | AAA22701 ABO68755 AGT33858 AKM20686 AKU26730 |
| PRF | 0701226A 1714237A |
| REF | WP_008880809 WP_011888453 WP_020961638 WP_033008865 WP_050368025 |
| SP | A4ITV1 P02417 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts