BMRB Entry 18211

Name: 1H, 15N and 13C resonance assignments for the LOTUS2 and LOTUS3 RNA binding domains of mouse TDRD7
Published: 2012-03-20

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PDB ID: 2ly2
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18211
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: 1H, 15N and 13C resonance assignments for the LOTUS2 and LOTUS3 RNA binding domains of mouse TDRD7 PubMed: 22481467

Deposition date: 2012-01-23 Original release date: 2012-03-20

Authors: Cui, Gaofeng; Botuyan, Maria Victoria; Mer, Georges

Citation: Cui, Gaofeng; Botuyan, Maria Victoria; Mer, Georges. "(1)H, (15)N and (13)C resonance assignments for the three LOTUS RNA binding domains of Tudor domain-containing protein TDRD7." Biomol. NMR Assignments 7, 79-83 (2013).

Assembly members:
TDRD7, polymer, 180 residues, Formula weight is not available

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
TDRD7: GHMDEVQNRIKEILDKHNNG IWISKLPHFYKEFYKEDLNQ GVLQQFEHWPHICTVEKPCG GGQDSLLYPARREQPLKSDQ DPEKELPPPPPAPKQEVPSQ GSPAVMPDVKEKVAELLGKY SSGLWASALPKAFEDMYKVK FPEDALKNLASLSDVCTINY ISGNTQKAILYAKLPLPTDK

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	834
15N chemical shifts	179
1H chemical shifts	1316

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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1	GLY	HIS	MET	ASP	GLU	VAL	GLN	ASN	ARG	ILE
2	LYS	GLU	ILE	LEU	ASP	LYS	HIS	ASN	ASN	GLY
3	ILE	TRP	ILE	SER	LYS	LEU	PRO	HIS	PHE	TYR
4	LYS	GLU	PHE	TYR	LYS	GLU	ASP	LEU	ASN	GLN
5	GLY	VAL	LEU	GLN	GLN	PHE	GLU	HIS	TRP	PRO
6	HIS	ILE	CYS	THR	VAL	GLU	LYS	PRO	CYS	GLY
7	GLY	GLY	GLN	ASP	SER	LEU	LEU	TYR	PRO	ALA
8	ARG	ARG	GLU	GLN	PRO	LEU	LYS	SER	ASP	GLN
9	ASP	PRO	GLU	LYS	GLU	LEU	PRO	PRO	PRO	PRO
10	PRO	ALA	PRO	LYS	GLN	GLU	VAL	PRO	SER	GLN
11	GLY	SER	PRO	ALA	VAL	MET	PRO	ASP	VAL	LYS
12	GLU	LYS	VAL	ALA	GLU	LEU	LEU	GLY	LYS	TYR
13	SER	SER	GLY	LEU	TRP	ALA	SER	ALA	LEU	PRO
14	LYS	ALA	PHE	GLU	ASP	MET	TYR	LYS	VAL	LYS
15	PHE	PRO	GLU	ASP	ALA	LEU	LYS	ASN	LEU	ALA
16	SER	LEU	SER	ASP	VAL	CYS	THR	ILE	ASN	TYR
17	ILE	SER	GLY	ASN	THR	GLN	LYS	ALA	ILE	LEU
18	TYR	ALA	LYS	LEU	PRO	LEU	PRO	THR	ASP	LYS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D (H)CCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1

PDB	2LY1 2LY2
GB	AAH29689
REF	NP_001277404 NP_666254 XP_006537580 XP_006537581
SP	Q8K1H1

Biological Magnetic Resonance Data Bank

BMRB Entry 18211

Title: 1H, 15N and 13C resonance assignments for the LOTUS2 and LOTUS3 RNA binding domains of mouse TDRD7 PubMed: 22481467

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	HIS	MET	ASP	GLU	VAL	GLN	ASN	ARG	ILE
2	LYS	GLU	ILE	LEU	ASP	LYS	HIS	ASN	ASN	GLY
3	ILE	TRP	ILE	SER	LYS	LEU	PRO	HIS	PHE	TYR
4	LYS	GLU	PHE	TYR	LYS	GLU	ASP	LEU	ASN	GLN
5	GLY	VAL	LEU	GLN	GLN	PHE	GLU	HIS	TRP	PRO
6	HIS	ILE	CYS	THR	VAL	GLU	LYS	PRO	CYS	GLY
7	GLY	GLY	GLN	ASP	SER	LEU	LEU	TYR	PRO	ALA
8	ARG	ARG	GLU	GLN	PRO	LEU	LYS	SER	ASP	GLN
9	ASP	PRO	GLU	LYS	GLU	LEU	PRO	PRO	PRO	PRO
10	PRO	ALA	PRO	LYS	GLN	GLU	VAL	PRO	SER	GLN
11	GLY	SER	PRO	ALA	VAL	MET	PRO	ASP	VAL	LYS
12	GLU	LYS	VAL	ALA	GLU	LEU	LEU	GLY	LYS	TYR
13	SER	SER	GLY	LEU	TRP	ALA	SER	ALA	LEU	PRO
14	LYS	ALA	PHE	GLU	ASP	MET	TYR	LYS	VAL	LYS
15	PHE	PRO	GLU	ASP	ALA	LEU	LYS	ASN	LEU	ALA
16	SER	LEU	SER	ASP	VAL	CYS	THR	ILE	ASN	TYR
17	ILE	SER	GLY	ASN	THR	GLN	LYS	ALA	ILE	LEU
18	TYR	ALA	LYS	LEU	PRO	LEU	PRO	THR	ASP	LYS

1	GLY	HIS	MET	ASP	GLU	VAL	GLN	ASN	ARG	ILE
2	LYS	GLU	ILE	LEU	ASP	LYS	HIS	ASN	ASN	GLY
3	ILE	TRP	ILE	SER	LYS	LEU	PRO	HIS	PHE	TYR
4	LYS	GLU	PHE	TYR	LYS	GLU	ASP	LEU	ASN	GLN
5	GLY	VAL	LEU	GLN	GLN	PHE	GLU	HIS	TRP	PRO
6	HIS	ILE	CYS	THR	VAL	GLU	LYS	PRO	CYS	GLY
7	GLY	GLY	GLN	ASP	SER	LEU	LEU	TYR	PRO	ALA
8	ARG	ARG	GLU	GLN	PRO	LEU	LYS	SER	ASP	GLN
9	ASP	PRO	GLU	LYS	GLU	LEU	PRO	PRO	PRO	PRO
10	PRO	ALA	PRO	LYS	GLN	GLU	VAL	PRO	SER	GLN
11	GLY	SER	PRO	ALA	VAL	MET	PRO	ASP	VAL	LYS
12	GLU	LYS	VAL	ALA	GLU	LEU	LEU	GLY	LYS	TYR
13	SER	SER	GLY	LEU	TRP	ALA	SER	ALA	LEU	PRO
14	LYS	ALA	PHE	GLU	ASP	MET	TYR	LYS	VAL	LYS
15	PHE	PRO	GLU	ASP	ALA	LEU	LYS	ASN	LEU	ALA
16	SER	LEU	SER	ASP	VAL	CYS	THR	ILE	ASN	TYR
17	ILE	SER	GLY	ASN	THR	GLN	LYS	ALA	ILE	LEU
18	TYR	ALA	LYS	LEU	PRO	LEU	PRO	THR	ASP	LYS

1	GLY	HIS	MET	ASP	GLU	VAL	GLN	ASN	ARG	ILE
2	LYS	GLU	ILE	LEU	ASP	LYS	HIS	ASN	ASN	GLY
3	ILE	TRP	ILE	SER	LYS	LEU	PRO	HIS	PHE	TYR
4	LYS	GLU	PHE	TYR	LYS	GLU	ASP	LEU	ASN	GLN
5	GLY	VAL	LEU	GLN	GLN	PHE	GLU	HIS	TRP	PRO
6	HIS	ILE	CYS	THR	VAL	GLU	LYS	PRO	CYS	GLY
7	GLY	GLY	GLN	ASP	SER	LEU	LEU	TYR	PRO	ALA
8	ARG	ARG	GLU	GLN	PRO	LEU	LYS	SER	ASP	GLN
9	ASP	PRO	GLU	LYS	GLU	LEU	PRO	PRO	PRO	PRO
10	PRO	ALA	PRO	LYS	GLN	GLU	VAL	PRO	SER	GLN
11	GLY	SER	PRO	ALA	VAL	MET	PRO	ASP	VAL	LYS
12	GLU	LYS	VAL	ALA	GLU	LEU	LEU	GLY	LYS	TYR
13	SER	SER	GLY	LEU	TRP	ALA	SER	ALA	LEU	PRO
14	LYS	ALA	PHE	GLU	ASP	MET	TYR	LYS	VAL	LYS
15	PHE	PRO	GLU	ASP	ALA	LEU	LYS	ASN	LEU	ALA
16	SER	LEU	SER	ASP	VAL	CYS	THR	ILE	ASN	TYR
17	ILE	SER	GLY	ASN	THR	GLN	LYS	ALA	ILE	LEU
18	TYR	ALA	LYS	LEU	PRO	LEU	PRO	THR	ASP	LYS