BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 18541

Title: NMR solution structure of midkine-b, mdkb   PubMed: 23418741

Deposition date: 2012-06-21 Original release date: 2013-04-02

Authors: Yang, Daiwen; Lim, Jackwee; Meng, Dan

Citation: Lim, Jackwee; Yao, Sheng; Graf, Martin; Winkler, Christoph; Yang, Daiwen. "Structure-function analysis of full-length midkine reveals novel residues important for heparin binding and zebrafish embryogenesis."  Biochem. J. 451, 407-415 (2013).

Assembly members:
midkine-b, polymer, 127 residues, 14021.246 Da.

Natural source:   Common Name: Zebrafish   Taxonomy ID: 7955   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Danio rerio

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
midkine-b: GSMKKKEKGKEPKADAECSE WQYGKCVPNSGDCGNGIREA TCNEQTKKTKCKVPCNWKKD FGADCKYKFGRWAECDTTTG TRSRSGTLKKALFNAECQTT IKVSKPCTPKTPKPKGGEKK KGKGKEN

Data sets:
Data typeCount
13C chemical shifts331
15N chemical shifts115
1H chemical shifts565

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Related Database Links:

PDB 2LUU
GB AAD38156 AAG27035 AAH59575 ABC67288 AJG05944
REF NP_571791

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts