BMRB Entry 18723
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18723
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Title: High resolution NMR solution structure of the theta-defensin RTD-1 PubMed: 23148585
Deposition date: 2012-09-18 Original release date: 2012-11-27
Authors: Conibear, Anne; Rosengren, K. Johan; Harvey, Peta; Craik, David
Citation: Conibear, Anne; Rosengren, K. Johan; Harvey, Peta; Craik, David. "Structural Characterization of the Cyclic Cystine Ladder Motif of -Defensins." Biochemistry 51, 9718-9726 (2012).
Assembly members:
RTD-1, polymer, 18 residues, 2110.656 Da.
Natural source: Common Name: Rhesus monkey Taxonomy ID: 9544 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Macacca mulatta
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
RTD-1: GFCRCLCRRGVCRCICTR
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 41 |
| 15N chemical shifts | 12 |
| 1H chemical shifts | 101 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | RTD-1 | 1 |
Entities:
Entity 1, RTD-1 18 residues - 2110.656 Da.
This is a head-to-tail cyclic peptide with a peptide bond between Arg18 and Gly1.
| 1 | GLY | PHE | CYS | ARG | CYS | LEU | CYS | ARG | ARG | GLY | ||||
| 2 | VAL | CYS | ARG | CYS | ILE | CYS | THR | ARG |
Samples:
sample_1: RTD-1 1.0 mM; H2O 90%; D2O 10%
sample_2: RTD-1 1.0 mM; D2O 100%
sample_conditions_1: pH: 4.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_2 | isotropic | sample_conditions_1 |
| 2D DQF-COSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H ECOSY | sample_2 | isotropic | sample_conditions_1 |
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
Software:
CcpNMR v2.1, CCPN - chemical shift assignment, data analysis, peak picking
TOPSPIN v2.1, Bruker Biospin - collection, processing
CYANA v3.0, Guntert, Mumenthaler and Wuthrich - structure solution
CNS v2.1, Brunger, Adams, Clore, Gros, Nilges and Read - refinement
NMR spectrometers:
- Bruker Avance 500 MHz
- Bruker Avance 600 MHz
- Bruker Avance 900 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts