BMRB Entry 18823
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18823
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Title: 1H, 13C and 15N resonance assignments of the C-terminal domain of PpdD PubMed: 23242787
Deposition date: 2012-11-06 Original release date: 2013-01-29
Authors: Amorim, Gisele; Cisneros, David; Delepierre, Muriel; Francetic, Olivera; Izadi-Pruneyre, Nadia
Citation: Amorim, Gisele; Cisneros, David; Delepierre, Muriel; Francetic, Olivera; Izadi-Pruneyre, Nadia. "(1)H, (15)N and (13)C resonance assignments of PpdD, a type IV pilin from enterohemorrhagic Escherichia coli." Biomol. NMR Assignments ., .-. (2012).
Assembly members:
PpdD, polymer, 132 residues, 14227.7895 Da.
Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
PpdD: MENYLRKAALTDMLQTFVPY
RTAVELCALEHGGLDTCDGG
SNGIPSPTTTRYVSAMSVAK
GVVSLTGQESLNGLSVVMTP
GWDNANGVTGWARNCNIQSD
SALQQACEDVFRFDDANLVP
RGSGLEHHHHHH
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 460 |
15N chemical shifts | 124 |
1H chemical shifts | 759 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | prepilin peptidase-dependent protein D | 1 |
Entities:
Entity 1, prepilin peptidase-dependent protein D 132 residues - 14227.7895 Da.
1 | MET | GLU | ASN | TYR | LEU | ARG | LYS | ALA | ALA | LEU | ||||
2 | THR | ASP | MET | LEU | GLN | THR | PHE | VAL | PRO | TYR | ||||
3 | ARG | THR | ALA | VAL | GLU | LEU | CYS | ALA | LEU | GLU | ||||
4 | HIS | GLY | GLY | LEU | ASP | THR | CYS | ASP | GLY | GLY | ||||
5 | SER | ASN | GLY | ILE | PRO | SER | PRO | THR | THR | THR | ||||
6 | ARG | TYR | VAL | SER | ALA | MET | SER | VAL | ALA | LYS | ||||
7 | GLY | VAL | VAL | SER | LEU | THR | GLY | GLN | GLU | SER | ||||
8 | LEU | ASN | GLY | LEU | SER | VAL | VAL | MET | THR | PRO | ||||
9 | GLY | TRP | ASP | ASN | ALA | ASN | GLY | VAL | THR | GLY | ||||
10 | TRP | ALA | ARG | ASN | CYS | ASN | ILE | GLN | SER | ASP | ||||
11 | SER | ALA | LEU | GLN | GLN | ALA | CYS | GLU | ASP | VAL | ||||
12 | PHE | ARG | PHE | ASP | ASP | ALA | ASN | LEU | VAL | PRO | ||||
13 | ARG | GLY | SER | GLY | LEU | GLU | HIS | HIS | HIS | HIS | ||||
14 | HIS | HIS |
Samples:
sample_1: PpdD, [U-13C; U-15N], 0.9 mM; sodium phosphate 50 mM; sodium chloride 50 mM; D2O 15%
sample_conditions_1: ionic strength: 0.1 M; pH: 7; pressure: 1 atm; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
2D 1H-13C HSQC | sample_1 | isotropic | sample_conditions_1 |
3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
3D HCCH-TOCSY | sample_1 | isotropic | sample_conditions_1 |
3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
3D 1H-13C NOESY | sample_1 | isotropic | sample_conditions_1 |
Software:
CcpNnmr_Analysis v2.1, CCPN - chemical shift assignment, data analysis, peak picking
NMR spectrometers:
- Varian INOVA 600 MHz
Related Database Links:
DBJ | BAB33535 BAB96678 BAG75632 BAI23471 BAI34110 |
EMBL | CAQ30623 CAR01475 CAR06329 CAR11328 CAR16249 |
GB | AAC36923 AAC73219 AAG54412 AAN41769 AAP15650 |
REF | NP_308139 NP_414650 NP_706062 WP_000360887 WP_000360895 |
SP | P36647 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts