BMRB Entry 19248

Name: Structure of SRSF1 RRM2 in complex with the RNA 5'-UGAAGGAC-3'
Published: 2013-07-08

Click here to enlarge.

PDB ID: 2m8d
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR19248
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title: Structure of SRSF1 RRM2 in complex with the RNA 5'-UGAAGGAC-3' PubMed: 23836656

Deposition date: 2013-05-17 Original release date: 2013-07-08

Authors: Clery, Antoine; Sinha, Rahul; Anczukow, Olga; Corrionero, Anna; Moursy, Ahmed; Daubner, Gerrit; Valcarcel, Juan; Krainer, Adrian; Allain, Frederic

Citation: Clery, Antoine; Sinha, Rahul; Anczukow, Olga; Corrionero, Anna; Moursy, Ahmed; Daubner, Gerrit; Valcarcel, Juan; Krainer, Adrian; Allain, Frederic H-T. "Isolated pseudo-RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition." Proc. Natl. Acad. Sci. U.S.A. 110, E2802-E2811 (2013).

Assembly members:
RNA_5'-UGAAGGAC-3, polymer, 8 residues, 2589.643 Da.
SRSF1_RRM2, polymer, 91 residues, 10338.676 Da.

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):
RNA_5'-UGAAGGAC-3: UGAAGGAC
SRSF1_RRM2: MAPRGRYGPPSRRSENRVVV SGLPPSGSWQDLKDHMREAG DVCYADVYRDGTGVVEFVRK EDMTYAVRKLDNTKFRSHEG ETAYIRVKVDG

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	271
15N chemical shifts	89
1H chemical shifts	638

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Entity Assembly ID	Entity Name	Entity ID
1	RNA_5'-UGAAGGAC-3	1
2	SRSF1_RRM2	2

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1

BMRB	19203
PDB	1X4C 2M7S 2M8D 2O3D 3BEG 4C0O
DBJ	BAB93456 BAC37367 BAE29641 BAE88160 BAF82622
EMBL	CAH92288
GB	AAA03476 AAA35564 AAA35565 AAH10264 AAH42354
REF	NP_001006919 NP_001033096 NP_001069862 NP_001071635 NP_001103022
SP	Q07955 Q0VCY7 Q3YLA6 Q5R7H2 Q6DII2
TPG	DAA19172

Biological Magnetic Resonance Data Bank

BMRB Entry 19248

Title: Structure of SRSF1 RRM2 in complex with the RNA 5'-UGAAGGAC-3' PubMed: 23836656

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: