BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 19573

Title: STRUCTURE OF LASSO PEPTIDE XANTHOMONIN II   PubMed: 24446383

Deposition date: 2013-10-23 Original release date: 2014-02-11

Authors: Hegemann, J.; Zimmermann, M.; Harms, K.; Xie, X.; Marahiel, M.

Citation: Hegemann, Julian; Zimmermann, Marcel; Zhu, Shaozhou; Steuber, Holger; Harms, Klaus; Xie, Xiulan; Marahiel, Mohamed. "Xanthomonins I-III: a new class of lasso peptides with a seven-residue macrolactam ring."  Angew. Chem. Int. Ed. Engl. 53, 2230-2234 (2014).

Assembly members:
XANTHOMONIN_II, polymer, 14 residues, 1289.419 Da.

Natural source:   Common Name: Xanthomonas Gardneri   Taxonomy ID: 90270   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Xanthomonas Gardneri

Experimental source:   Production method: recombinant technology   Host organism: XANTHOMONAS GARDNERI

Entity Sequences (FASTA):
XANTHOMONIN_II: GGPLAGEEMGGITT

Data sets:
Data typeCount
1H chemical shifts81

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1XANTHOMONIN II1

Entities:

Entity 1, XANTHOMONIN II 14 residues - 1289.419 Da.

1   GLYGLYPROLEUALAGLYGLUGLUMETGLY
2   GLYILETHRTHR

Samples:

sample_1: XANTHOMONIN II 8.8 mM

sample_conditions_1: ionic strength: 0 M; pressure: 1 atm; temperature: 305 K

Experiments:

NameSampleSample stateSample conditions
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution

NMR spectrometers:

  • Bruker Avance 600 MHz