BMRB Entry 19638
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19638
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Title: Solution structure of cytochrome c Y67H PubMed: 25210769
Deposition date: 2013-11-26 Original release date: 2014-10-27
Authors: Lan, W.; Wang, Z.; Ying, T.; Yang, Z.; Zhang, X.; Wu, H.; Liu, M.; Tian, X.
Citation: Lan, Wenxian; Wang, Zhonghua; Yang, Zhongzheng; Ying, Tianlei; Zhang, Xu; Tan, Xiangshi; Liu, Maili; Cao, Chunyang; Huang, Zhong-Xian. "Structural Basis for Cytochrome c Y67H Mutant to Function as a Peroxidase" Plos One 9, e107305-e107305 (2014).
Assembly members:
entity_1, polymer, 108 residues, 11988.768 Da.
entity_HEC, non-polymer, 618.503 Da.
Natural source: Common Name: baker Taxonomy ID: 4932 Superkingdom: not available Kingdom: not available Genus/species: Eukaryota Fungi
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity_1: TEFKAGSAKKGATLFKTRCL
QCHTVEKGGPHKVGPNLHGI
FGRHSGQAEGYSYTDANIKK
NVLWDENNMSEHLTNPAKYI
PGTKMAFGGLKKEKDRNDLI
TYLKKATE
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 667 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | cytochrome c Y67H | 1 |
| 2 | HEME C | 2 |
Entities:
Entity 1, cytochrome c Y67H 108 residues - 11988.768 Da.
| 1 | THR | GLU | PHE | LYS | ALA | GLY | SER | ALA | LYS | LYS | ||||
| 2 | GLY | ALA | THR | LEU | PHE | LYS | THR | ARG | CYS | LEU | ||||
| 3 | GLN | CYS | HIS | THR | VAL | GLU | LYS | GLY | GLY | PRO | ||||
| 4 | HIS | LYS | VAL | GLY | PRO | ASN | LEU | HIS | GLY | ILE | ||||
| 5 | PHE | GLY | ARG | HIS | SER | GLY | GLN | ALA | GLU | GLY | ||||
| 6 | TYR | SER | TYR | THR | ASP | ALA | ASN | ILE | LYS | LYS | ||||
| 7 | ASN | VAL | LEU | TRP | ASP | GLU | ASN | ASN | MET | SER | ||||
| 8 | GLU | HIS | LEU | THR | ASN | PRO | ALA | LYS | TYR | ILE | ||||
| 9 | PRO | GLY | THR | LYS | MET | ALA | PHE | GLY | GLY | LEU | ||||
| 10 | LYS | LYS | GLU | LYS | ASP | ARG | ASN | ASP | LEU | ILE | ||||
| 11 | THR | TYR | LEU | LYS | LYS | ALA | THR | GLU |
Entity 2, HEME C - C34 H34 Fe N4 O4 - 618.503 Da.
| 1 | HEC |
Samples:
sample_1: cytc c y67h 1 mM; phosphate buffer NA 50 mM
sample_2: cytc c y67h 1 mM; phosphate buffer NA 50 mM
sample_conditions_1: ionic strength: 50 mM; pH: 7.0; pressure: 1 atm; temperature: 293 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| NOESY | sample_1 | isotropic | sample_conditions_1 |
| TOCSY | sample_2 | isotropic | sample_conditions_1 |
| DQCOSY | sample_2 | isotropic | sample_conditions_1 |
Software:
CNS, Brunger A. T. et.al. - refinement
NMR spectrometers:
- Agilent NMR 600 MHz