BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 25402

Title: Solution structure of the full length sorting nexin 3   PubMed: 25893673

Deposition date: 2014-12-20 Original release date: 2015-08-13

Authors: Lenoir, Marc; Rajesh, Sandya; Gruenberg, Jean; Overduin, Michael; Kaur, Jaswant

Citation: Overduin, Michael; Rajesh, Sandya; Gruenberg, Jean; Lenoir, Marc. "Secondary structure and 1H, 13C, 15N resonance assignments of the endosomal sorting protein sorting nexin 3"  Biomol. NMR Assign. 9, 355-358 (2015).

Assembly members:
SNX3FL, polymer, 172 residues, 19924.6031 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
SNX3FL: MAHHHHHHVGTAETVADTRR LITKPQNLNDAYGPPSNFLE IDVSNPQTVGVGRGRFTTYE IRVKTNLPIFKLKESTVRRR YSDFEWLRSELERESKVVVP PLPGKAFLRQLPFRGDDGIF DDNFIEERKQGLEQFINKVA GHPLAQNERCLHMFLQDEII DKSYTPSKIRHA

Data sets:
Data typeCount
13C chemical shifts729
15N chemical shifts165
1H chemical shifts1177

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1SNX3FL1

Entities:

Entity 1, SNX3FL 172 residues - 19924.6031 Da.

1   METALAHISHISHISHISHISHISVALGLY
2   THRALAGLUTHRVALALAASPTHRARGARG
3   LEUILETHRLYSPROGLNASNLEUASNASP
4   ALATYRGLYPROPROSERASNPHELEUGLU
5   ILEASPVALSERASNPROGLNTHRVALGLY
6   VALGLYARGGLYARGPHETHRTHRTYRGLU
7   ILEARGVALLYSTHRASNLEUPROILEPHE
8   LYSLEULYSGLUSERTHRVALARGARGARG
9   TYRSERASPPHEGLUTRPLEUARGSERGLU
10   LEUGLUARGGLUSERLYSVALVALVALPRO
11   PROLEUPROGLYLYSALAPHELEUARGGLN
12   LEUPROPHEARGGLYASPASPGLYILEPHE
13   ASPASPASNPHEILEGLUGLUARGLYSGLN
14   GLYLEUGLUGLNPHEILEASNLYSVALALA
15   GLYHISPROLEUALAGLNASNGLUARGCYS
16   LEUHISMETPHELEUGLNASPGLUILEILE
17   ASPLYSSERTYRTHRPROSERLYSILEARG
18   HISALA

Samples:

Assignments: SNX3FL, [U-100% 13C; U-100% 15N], 0.5 mM; NaCl 100 mM; Sodium phosphate 20 mM

CondSet1: ionic strength: 0.100 M; pH: 6.5; pressure: 1.000 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQC/HMQCAssignmentsisotropicCondSet1
3D HNCAAssignmentsisotropicCondSet1
3D HN(CO)CAAssignmentsisotropicCondSet1
3D HNCOAssignmentsisotropicCondSet1
3D CBCA(CO)NHAssignmentsisotropicCondSet1
3D HNCACBAssignmentsisotropicCondSet1
3D HNCOAssignmentsisotropicCondSet1
3D HN(CA)COAssignmentsisotropicCondSet1
3D HCCH-TOCSYAssignmentsisotropicCondSet1
3D 1H-13C NOESYAssignmentsisotropicCondSet1
3D 1H-15N NOESYAssignmentsisotropicCondSet1
2D 1H-13C HSQCAssignmentsisotropicCondSet1

Software:

CcpNmr_Analysis v2.2, CCPN, Linge, O'Donoghue and Nilges - chemical shift calculation, data analysis, structure solution

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Varian UnityInova 800 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts