BMRB Entry 25872
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25872
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Title: TrkA transmembrane domain NMR structure in DPC micelles
Deposition date: 2015-10-29 Original release date: 2016-11-03
Authors: Nadezhdin, Kirill; Goncharuk, Sergey; Arseniev, Alexander
Citation: Nadezhdin, Kirill; Goncharuk, Sergey; Arseniev, Alexander; Vilar, Marcial. "TrkA transmembrane domain NMR structure in DPC micelles" Not known ., .-..
Assembly members:
entity, polymer, 39 residues, 4214.127 Da.
Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free
Entity Sequences (FASTA):
entity: MKKDETPFGVSVAVGLAVFA
CLFLSTLLLVLNKAGRRNK
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 154 |
| 15N chemical shifts | 37 |
| 1H chemical shifts | 277 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity_1 | 1 |
| 2 | entity_2 | 1 |
Entities:
Entity 1, entity_1 39 residues - 4214.127 Da.
| 1 | MET | LYS | LYS | ASP | GLU | THR | PRO | PHE | GLY | VAL | ||||
| 2 | SER | VAL | ALA | VAL | GLY | LEU | ALA | VAL | PHE | ALA | ||||
| 3 | CYS | LEU | PHE | LEU | SER | THR | LEU | LEU | LEU | VAL | ||||
| 4 | LEU | ASN | LYS | ALA | GLY | ARG | ARG | ASN | LYS |
Samples:
sample_1: entity, [U-100% 13C; U-100% 15N], 1 mM; entity 1 mM; DPC, [U-100% 2H], 40 mM; potassium phosphate 20 mM; H2O 95%; D2O 5%
sample_conditions_1: pH: 5.9; pressure: 1 atm; temperature: 318 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCA | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HNHA | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CO)CA | sample_1 | isotropic | sample_conditions_1 |
Software:
TOPSPIN, Bruker Biospin - collection, processing
CYANA, Guntert, Mumenthaler and Wuthrich - refinement, structure solution
Molmol, Koradi, Billeter and Wuthrich - visualization
CARA, Keller and Wuthrich - chemical shift assignment, data analysis, peak picking
NMR spectrometers:
- Bruker Avance 800 MHz
- Bruker Avance 600 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts