BMRB Entry 30135
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR30135
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Title: Structure of the C-terminal Helical Repeat Domain of Elongation Factor 2 Kinase PubMed: 27571275
Deposition date: 2016-07-07 Original release date: 2016-09-09
Authors: Piserchio, A.; Will, N.; Snyder, I.; Ferguson, S.; Giles, D.; Dalby, K.; Ghose, R.
Citation: Will, N.; Piserchio, A.; Snyder, I.; Ferguson, S.; Giles, D.; Dalby, K.; Ghose, R.. "Structure of the C-terminal Helical Repeat Domain of Eukaryotic Elongation Factor 2 Kinase." Biochemistry 55, 5377-5386 (2016).
Assembly members:
entity_1, polymer, 103 residues, 11856.014 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity_1: GSHMSPDRCQDWLEALHWYN
TALEMTDCDEGGEYDGMQDE
PRYMMLAREAEMLFTGGYGL
EKDPQRSGDLYTQAAEAAME
AMKGRLANQYYQKAEEAWAQ
MEE
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 416 |
| 15N chemical shifts | 109 |
| 1H chemical shifts | 613 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity_1 | 1 |
Entities:
Entity 1, entity_1 103 residues - 11856.014 Da.
| 1 | GLY | SER | HIS | MET | SER | PRO | ASP | ARG | CYS | GLN | ||||
| 2 | ASP | TRP | LEU | GLU | ALA | LEU | HIS | TRP | TYR | ASN | ||||
| 3 | THR | ALA | LEU | GLU | MET | THR | ASP | CYS | ASP | GLU | ||||
| 4 | GLY | GLY | GLU | TYR | ASP | GLY | MET | GLN | ASP | GLU | ||||
| 5 | PRO | ARG | TYR | MET | MET | LEU | ALA | ARG | GLU | ALA | ||||
| 6 | GLU | MET | LEU | PHE | THR | GLY | GLY | TYR | GLY | LEU | ||||
| 7 | GLU | LYS | ASP | PRO | GLN | ARG | SER | GLY | ASP | LEU | ||||
| 8 | TYR | THR | GLN | ALA | ALA | GLU | ALA | ALA | MET | GLU | ||||
| 9 | ALA | MET | LYS | GLY | ARG | LEU | ALA | ASN | GLN | TYR | ||||
| 10 | TYR | GLN | LYS | ALA | GLU | GLU | ALA | TRP | ALA | GLN | ||||
| 11 | MET | GLU | GLU |
Samples:
sample_1: DTT 4 ± 0.1 mM; eEF2K_627-725, [U-99% 13C; U-99% 15N], 600 ± 30 uM; sodium phosphate 50 ± 1 mM
sample_2: DTT 4 ± 0.1 mM; eEF2K_627-725, [U-99% 13C; U-99% 15N], 300 ± 25 uM; sodium phosphate 50 ± 1 mM
sample_3: DTT 4 ± 0.1 mM; Pf1 phage (ASLA Ltd) 15 ± 1 mg/mL; eEF2K_627-725, [U-99% 13C; U-99% 1, 300 ± 30 uM; sodium phosphate 50 ± 1 mM
sample_conditions_1: ionic strength: 50 mM; pH: 6.5; pressure: 1 atm; temperature: 298.15 K
sample_conditions_2: ionic strength: 50 mM; pH: 6.5 pH*; pressure: 1 atm; temperature: 298.15 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| HNCO | sample_1 | isotropic | sample_conditions_1 |
| HNCACO | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| H(CC)CONH | sample_1 | isotropic | sample_conditions_1 |
| (H)CCCONH | sample_1 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY | sample_2 | isotropic | sample_conditions_2 |
| 3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY aliphatic | sample_2 | isotropic | sample_conditions_2 |
| 3D 1H-15N NOESY aromatic | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample_2 | isotropic | sample_conditions_2 |
| 15N IPAP | sample_3 | anisotropic | sample_conditions_1 |
Software:
ARIA, Linge, O'Donoghue and Nilges - refinement
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMRView, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking
ProcheckNMR, Laskowski and MacArthur - data analysis
TALOS, Cornilescu, Delaglio and Bax - data analysis
WhatIF, Vriend - data analysis
NMR spectrometers:
- Varian INOVA 600 MHz
- Bruker Avance 600 MHz
- Bruker AvanceIII 700 MHz
- Bruker Avance 800 MHz
- Bruker AvanceIII 600 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts