BMRB Entry 30305

Name: Solution structure of C2 domain from protein kinase C alpha in ternary complex with calcium and V5-pHM peptide
Published: 2018-04-20

Click here to enlarge.

PDB ID: 5w4s
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR30305
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title: Solution structure of C2 domain from protein kinase C alpha in ternary complex with calcium and V5-pHM peptide PubMed: 29642029

Deposition date: 2017-06-12 Original release date: 2018-04-20

Authors: Yang, Y.; Igumenova, T.

Citation: Yang, Yuan; Shu, Chang; Li, Pingwei; Igumenova, Tatyana. "Structural basis of protein kinase C alpha regulation by the C-terminal tail" Biophys. J. 114, 1590-1603 (2018).

Assembly members:
Protein kinase C alpha type, polymer, 139 residues, 16240.451 Da.
V5-pHM peptide, polymer, 12 residues, 1298.187 Da.
CALCIUM ION, non-polymer, 40.078 Da.

Natural source: Common Name: Rat Taxonomy ID: 10116 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Rattus norvegicus

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
Protein kinase C alpha type: HTEKRGRIYLKAEVTDEKLH VTVRDAKNLIPMDPNGLSDP YVKLKLIPDPKNESKQKTKT IRSTLNPQWNESFTFKLKPS DKDRRLSVEIWDWDRTTRND FMGSLSFGVSELMKMPASGW YKLLNQEEGEYYNVPIPEG
V5-pHM peptide: XDQSDFEGFXYX

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
1H chemical shifts	59

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1
2	entity_2	2
3	entity_3, 1	3
4	entity_3, 2	3

Samples:

sample_1: C2 domain of protein kinase C alpha, [U-13C; U-15N], 0.89 mM; CALCIUM ION 2.225 mM; MES 6.7 mM; V5-pHM peptide 2 mM; potassium chloride 67 mM; sodium azide 0.2 mg/mL

sample_2: C2 domain of protein kinase C alpha, [U-13C; U-15N], 1.47 mM; CALCIUM ION 3.75 mM; MES 6.7 mM; V5-pHM peptide 0.6 mM; potassium chloride 67 mM; sodium azide 0.2 mg/mL

sample_3: C2 domain of protein kinase C alpha, [U-13C; U-15N], 0.89 mM; CALCIUM ION 2.225 mM; MES 6.7 mM; V5-pHM peptide 2 mM; potassium chloride 67 mM; sodium azide 0.2 mg/mL

sample_conditions_1: ionic strength: 0.076 M; pH: 6.0; pressure: 1 atm; temperature: 296.15 K

sample_conditions_2: ionic strength: 0.077 M; pH: 6.0; pressure: 1 atm; temperature: 296.15 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_2
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_3	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_3	isotropic	sample_conditions_1
3D HCCH-COSY	sample_3	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D aromatic HCCH-TOCSY	sample_3	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_3	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
2D [F2-15N,13C filtered] NOESY	sample_1	isotropic	sample_conditions_1
2D [F2-15N,13C filtered] NOESY	sample_3	isotropic	sample_conditions_1
2D [F1,F2-15N,13C filtered] NOESY	sample_1	isotropic	sample_conditions_1
2D [F1,F2-15N,13C filtered] NOESY	sample_2	isotropic	sample_conditions_2
2D [F1,F2-15N,13C filtered] TOCSY	sample_1	isotropic	sample_conditions_1
2D [F1,F2-15N,13C filtered] TOCSY	sample_2	isotropic	sample_conditions_2
3D [F1-15N,13C filtered] 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D [F1-15N,13C filtered] 1H-13C NOESY	sample_3	isotropic	sample_conditions_1

Biological Magnetic Resonance Data Bank

BMRB Entry 30305

Title: Solution structure of C2 domain from protein kinase C alpha in ternary complex with calcium and V5-pHM peptide PubMed: 29642029

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers: