BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 34152

Title: Solution NMR structure of DREB2A(255-272) bound to RCD1-RST

Deposition date: 2017-06-23 Original release date: 2018-04-13

Authors: Bugge, K.; Staby, L.; Skriver, K.; Kragelund, B.

Citation: Bugge, K.; Staby, L.; Kemplen, K.; Bendsen, S.; Jensen, M.; Olsen, J.; Skriver, K.; Kragelund, B.. "The alpha-alpha-hub domains: PAH, TAFH, NCBD and RST: A novel hub-family in transcriptional networks"  . ., .-..

Assembly members:
DREB2A, polymer, 18 residues, 2057.134 Da.

Natural source:   Common Name: Thale cress   Taxonomy ID: 3702   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Arabidopsis thaliana

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
DREB2A: SSDMFDVDELLRDLNGDD

Data sets:
Data typeCount
13C chemical shifts49
15N chemical shifts15
1H chemical shifts95

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 18 residues - 2057.134 Da.

1   SERSERASPMETPHEASPVALASPGLULEU
2   LEUARGASPLEUASNGLYASPASP

Samples:

sample_1: DREB2A, [U-13C; U-15N], 240 uM; DSS 0.7 mM; RCD1-RST 240 uM; sodium azide 0.2 mg/mL; sodium chloride 100 mM

sample_2: DREB2A, [U-15N], 200 uM; DSS 0.7 mM; RCD1-RST 200 uM; sodium azide 0.2 mg/mL; sodium chloride 100 mM

sample_conditions_1: ionic strength: 100 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D HNHAsample_2isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CA)COsample_1isotropicsample_conditions_1

Software:

Analysis, CCPN - chemical shift assignment, data analysis

CYANA, Guntert, Mumenthaler and Wuthrich - structure calculation

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

ProcheckNMR, Laskowski and MacArthur - geometry optimization

TALOS, Cornilescu, Delaglio and Bax - data analysis

TOPSPIN, Bruker Biospin - collection

VNMR, Varian - collection

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement

NMR spectrometers:

  • Varian INOVA 800 MHz
  • Bruker Avance 750 MHz
  • Bruker Avance 600 MHz
  • Varian INOVA 750 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts