BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 34216

Title: PH domain from TgAPH   PubMed: 29910186

Deposition date: 2017-12-13 Original release date: 2019-01-28

Authors: Darvill, N.; Liu, B.; Matthews, S.; Soldati-Favre, D.; Rouse, S.; Benjamin, S.; Blake, T.; Dubois, D.; Hammoudi, P.; Pino, P.

Citation: Darvill, N.; Dubois, D.; Rouse, S.; Hammoudi, P.; Blake, T.; Benjamin, S.; Liu, B.; Soldati-Favre, D.; Matthews, S.. "Structural Basis of Phosphatidic Acid Sensing by APH in Apicomplexan Parasites."  Structure 26, 1059-1071 (2018).

Assembly members:
entity_1, polymer, 121 residues, 13759.891 Da.

Natural source:   Common Name: Toxoplasma gondii   Taxonomy ID: 508771   Superkingdom: Eukaryota   Kingdom: not available   Genus/species: Toxoplasma gondii

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
entity_1: SASDIRMKKVMQYRRALTKV VKLKTHLFSETVKVTCSKDG EEVQWFKGKSTAGAQDRKKP SGGFPVDKITSVKSQADNTK VLVITVNNPQPTTYNFTFKS PGERESWQEQIQSLMKFMSM K

Data sets:
Data typeCount
13C chemical shifts538
15N chemical shifts126
1H chemical shifts846

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 121 residues - 13759.891 Da.

1   SERALASERASPILEARGMETLYSLYSVAL
2   METGLNTYRARGARGALALEUTHRLYSVAL
3   VALLYSLEULYSTHRHISLEUPHESERGLU
4   THRVALLYSVALTHRCYSSERLYSASPGLY
5   GLUGLUVALGLNTRPPHELYSGLYLYSSER
6   THRALAGLYALAGLNASPARGLYSLYSPRO
7   SERGLYGLYPHEPROVALASPLYSILETHR
8   SERVALLYSSERGLNALAASPASNTHRLYS
9   VALLEUVALILETHRVALASNASNPROGLN
10   PROTHRTHRTYRASNPHETHRPHELYSSER
11   PROGLYGLUARGGLUSERTRPGLNGLUGLN
12   ILEGLNSERLEUMETLYSPHEMETSERMET
13   LYS

Samples:

sample_1: C-terminal PH domain from TgAPH, [U-100% 15N]; [U-100% 13C], 730 uM; NaCl 150 mM

sample_conditions_1: ionic strength: 150 mM; pH: 7; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1

Software:

CNS, Brunger A. T. et.al. - refinement

ARIA, Linge, O'Donoghue and Nilges - structure calculation

NMRView, Johnson, One Moon Scientific - chemical shift assignment, peak picking

NMR spectrometers:

  • Bruker DRX 800 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts