BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 34463

Title: Structural and DNA Binding Properties of Mycobacterial Integration Host Factor mIHF   PubMed: 31846718

Deposition date: 2019-12-11 Original release date: 2019-12-20

Authors: Herrmann, T.

Citation: Odermatt, N.; Lelli, M.; Herrmann, T.; Abriata, L.; Japaridze, A.; Voilquin, H.; Singh, R.; Piton, J.; Emsley, L.; Dietler, G.; Cole, S.. "Structural and DNA Binding Properties of Mycobacterial Integration Host Factor mIHF."  J. Struct. Biol. ., 107434-107434 (2019).

Assembly members:
entity_1, polymer, 109 residues, 11909.892 Da.

Natural source:   Common Name: Mycobacterium tuberculosis   Taxonomy ID: 1773   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Mycobacterium tuberculosis

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
entity_1: GSHMVALPQLTDEQRAAALE KAAAARRARAELKDRLKRGG TNLTQVLKDAESDEVLGKMK VSALLEALPKVGKVKAQEIM TELEIAPTRRLRGLGDRQRK ALLEKFGSA

Data sets:
Data typeCount
13C chemical shifts324
15N chemical shifts111
1H chemical shifts674

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 109 residues - 11909.892 Da.

1   GLYSERHISMETVALALALEUPROGLNLEU
2   THRASPGLUGLNARGALAALAALALEUGLU
3   LYSALAALAALAALAARGARGALAARGALA
4   GLULEULYSASPARGLEULYSARGGLYGLY
5   THRASNLEUTHRGLNVALLEULYSASPALA
6   GLUSERASPGLUVALLEUGLYLYSMETLYS
7   VALSERALALEULEUGLUALALEUPROLYS
8   VALGLYLYSVALLYSALAGLNGLUILEMET
9   THRGLULEUGLUILEALAPROTHRARGARG
10   LEUARGGLYLEUGLYASPARGGLNARGLYS
11   ALALEULEUGLULYSPHEGLYSERALA

Samples:

sample_1: Mycobacterial integration host factor (mIHF), [U-13C; U-15N], 1.34 mM; sodium phosphate 50 mM; sodium chloride 100 mM

sample_conditions_1: ionic strength: 100 mM; pH: 7.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
CBCACONHsample_1isotropicsample_conditions_1
HACACONHsample_1isotropicsample_conditions_1
HACANHsample_1isotropicsample_conditions_1
1H-13C 3D HSQC NOESYsample_1isotropicsample_conditions_1
1H-15N 3D HSQC NOESYsample_1isotropicsample_conditions_1

Software:

CNS, Brunger A. T. et.al. - refinement

CYANA v3.98, Guntert, Mumenthaler and Wuthrich - structure calculation

UNIO v2.9, Herrmann, T. et al., UNIO-ATNOS module, UNIO-ATNOS/CANDID for automated NOE assignment - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

  • Bruker AVANCE III 1000 MHz
  • Bruker AVANCE III 600 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts