BMRB Entry 34511

Name: The N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoprotein
Published: 2020-04-06

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34511

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: The N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoprotein

Deposition date: 2020-03-31 Original release date: 2020-04-06

Authors: Veverka, V.; Boura, E.

Citation: Veverka, V.. "The N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoprotein" . ., .-..

Assembly members:
entity_1, polymer, 140 residues, 15129.853 Da.

Natural source: Common Name: COVID-19 virus Taxonomy ID: 2697049 Superkingdom: Viruses Kingdom: not available Genus/species: Betacoronavirus COVID-19

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
entity_1: GAMGLPNNTASWFTALTQHG KEDLKFPRGQGVPINTNSSP DDQIGYYRRATRRIRGGDGK MKDLSPRWYFYYLGTGPEAG LPYGANKDGIIWVATEGALN TPKDHIGTRNPANNAAIVLQ LPQGTTLPKGFYAEGSRGGS

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	574
15N chemical shifts	151
1H chemical shifts	940

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts

1	GLY	ALA	MET	GLY	LEU	PRO	ASN	ASN	THR	ALA
2	SER	TRP	PHE	THR	ALA	LEU	THR	GLN	HIS	GLY
3	LYS	GLU	ASP	LEU	LYS	PHE	PRO	ARG	GLY	GLN
4	GLY	VAL	PRO	ILE	ASN	THR	ASN	SER	SER	PRO
5	ASP	ASP	GLN	ILE	GLY	TYR	TYR	ARG	ARG	ALA
6	THR	ARG	ARG	ILE	ARG	GLY	GLY	ASP	GLY	LYS
7	MET	LYS	ASP	LEU	SER	PRO	ARG	TRP	TYR	PHE
8	TYR	TYR	LEU	GLY	THR	GLY	PRO	GLU	ALA	GLY
9	LEU	PRO	TYR	GLY	ALA	ASN	LYS	ASP	GLY	ILE
10	ILE	TRP	VAL	ALA	THR	GLU	GLY	ALA	LEU	ASN
11	THR	PRO	LYS	ASP	HIS	ILE	GLY	THR	ARG	ASN
12	PRO	ALA	ASN	ASN	ALA	ALA	ILE	VAL	LEU	GLN
13	LEU	PRO	GLN	GLY	THR	THR	LEU	PRO	LYS	GLY
14	PHE	TYR	ALA	GLU	GLY	SER	ARG	GLY	GLY	SER

Biological Magnetic Resonance Data Bank

BMRB Entry 34511

Title: The N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoprotein

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	GLY	ALA	MET	GLY	LEU	PRO	ASN	ASN	THR	ALA
2	SER	TRP	PHE	THR	ALA	LEU	THR	GLN	HIS	GLY
3	LYS	GLU	ASP	LEU	LYS	PHE	PRO	ARG	GLY	GLN
4	GLY	VAL	PRO	ILE	ASN	THR	ASN	SER	SER	PRO
5	ASP	ASP	GLN	ILE	GLY	TYR	TYR	ARG	ARG	ALA
6	THR	ARG	ARG	ILE	ARG	GLY	GLY	ASP	GLY	LYS
7	MET	LYS	ASP	LEU	SER	PRO	ARG	TRP	TYR	PHE
8	TYR	TYR	LEU	GLY	THR	GLY	PRO	GLU	ALA	GLY
9	LEU	PRO	TYR	GLY	ALA	ASN	LYS	ASP	GLY	ILE
10	ILE	TRP	VAL	ALA	THR	GLU	GLY	ALA	LEU	ASN
11	THR	PRO	LYS	ASP	HIS	ILE	GLY	THR	ARG	ASN
12	PRO	ALA	ASN	ASN	ALA	ALA	ILE	VAL	LEU	GLN
13	LEU	PRO	GLN	GLY	THR	THR	LEU	PRO	LYS	GLY
14	PHE	TYR	ALA	GLU	GLY	SER	ARG	GLY	GLY	SER

1	GLY	ALA	MET	GLY	LEU	PRO	ASN	ASN	THR	ALA
2	SER	TRP	PHE	THR	ALA	LEU	THR	GLN	HIS	GLY
3	LYS	GLU	ASP	LEU	LYS	PHE	PRO	ARG	GLY	GLN
4	GLY	VAL	PRO	ILE	ASN	THR	ASN	SER	SER	PRO
5	ASP	ASP	GLN	ILE	GLY	TYR	TYR	ARG	ARG	ALA
6	THR	ARG	ARG	ILE	ARG	GLY	GLY	ASP	GLY	LYS
7	MET	LYS	ASP	LEU	SER	PRO	ARG	TRP	TYR	PHE
8	TYR	TYR	LEU	GLY	THR	GLY	PRO	GLU	ALA	GLY
9	LEU	PRO	TYR	GLY	ALA	ASN	LYS	ASP	GLY	ILE
10	ILE	TRP	VAL	ALA	THR	GLU	GLY	ALA	LEU	ASN
11	THR	PRO	LYS	ASP	HIS	ILE	GLY	THR	ARG	ASN
12	PRO	ALA	ASN	ASN	ALA	ALA	ILE	VAL	LEU	GLN
13	LEU	PRO	GLN	GLY	THR	THR	LEU	PRO	LYS	GLY
14	PHE	TYR	ALA	GLU	GLY	SER	ARG	GLY	GLY	SER

1	GLY	ALA	MET	GLY	LEU	PRO	ASN	ASN	THR	ALA
2	SER	TRP	PHE	THR	ALA	LEU	THR	GLN	HIS	GLY
3	LYS	GLU	ASP	LEU	LYS	PHE	PRO	ARG	GLY	GLN
4	GLY	VAL	PRO	ILE	ASN	THR	ASN	SER	SER	PRO
5	ASP	ASP	GLN	ILE	GLY	TYR	TYR	ARG	ARG	ALA
6	THR	ARG	ARG	ILE	ARG	GLY	GLY	ASP	GLY	LYS
7	MET	LYS	ASP	LEU	SER	PRO	ARG	TRP	TYR	PHE
8	TYR	TYR	LEU	GLY	THR	GLY	PRO	GLU	ALA	GLY
9	LEU	PRO	TYR	GLY	ALA	ASN	LYS	ASP	GLY	ILE
10	ILE	TRP	VAL	ALA	THR	GLU	GLY	ALA	LEU	ASN
11	THR	PRO	LYS	ASP	HIS	ILE	GLY	THR	ARG	ASN
12	PRO	ALA	ASN	ASN	ALA	ALA	ILE	VAL	LEU	GLN
13	LEU	PRO	GLN	GLY	THR	THR	LEU	PRO	LYS	GLY
14	PHE	TYR	ALA	GLU	GLY	SER	ARG	GLY	GLY	SER