BMRB Entry 4250

Name: Structure of the 3' hairpin of the TYMV pseudoknot: Preformation in RNA folding
Published: 2000-02-25

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4250

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Structure of the 3' hairpin of the TYMV pseudoknot: Preformation in RNA folding

Deposition date: 1998-10-15 Original release date: 2000-02-25

Authors: Kolk, M.; van der Graaf, M.; Fransen, C.; Wijmenga, S.; Pleij, C.; Heus, H.; Hilbers, C.

Citation: Kolk, M.; van der Graaf, M.; Fransen, C.; Wijmenga, S.; Pleij, C.; Heus, H.; Hilbers, C.. "Structure of the 3' hairpin of the TYMV pseudoknot: Preformation in RNA folding" EMBO J. 17, 7498-7504 (1998).

Assembly members:
3' hairpin of TYMV pseudoknot, polymer, 23 residues, Formula weight is not available

Natural source: Common Name: TYMV Taxonomy ID: 12154 Superkingdom: viruses Kingdom: not available Genus/species: Tymovirus Turnip yellow mosaic virus

Experimental source: Production method: enzymatic semisynthesis

Entity Sequences (FASTA):
3' hairpin of TYMV pseudoknot: GGUUCCGAGGGUCAUCGGAA CCA

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_one

Data type	Count
1H chemical shifts	149

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	TYMV-RNA	1

Entities:

Entity 1, TYMV-RNA 23 residues - Formula weight is not available

1

G

U

C

G

A

G

2

G

U

C

A

U

C

G

A

3

C

A

Samples:

sample_one: 3' hairpin of TYMV pseudoknot 3.5 mM

sample_conditions_one: pH*: 6.8; temperature: 295 K

Experiments:

Name	Sample	Sample state	Sample conditions
NOESY	sample_one	not available	sample_conditions_one
DQF COSY	sample_one	not available	sample_conditions_one
{31P-1H} HETCOR	sample_one	not available	sample_conditions_one
{13C-1H} HMQC	sample_one	not available	sample_conditions_one

Software:

No software information available

NMR spectrometers:

Bruker AM 400 MHz
Bruker AMX 600 MHz