BMRB Entry 4781
Click here to enlarge.
PDB ID: 1f6u
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR4781
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry
Title: NMR Structure of Stem-loop SL2 of the HIV-1 Psi RNA Packaging Signal Reveals a Novel A-U-A Base-triple Platform PubMed: 10860728
Deposition date: 2000-07-10 Original release date: 2002-04-04
Authors: Amarasinghe, Gaya; De Guzman, Roberto; Turner, Ryan; Summers, Michael
Citation: Amarasinghe, Gaya; De Guzman, Roberto; Turner, Ryan; Summers, Michael. "NMR Structure of Stem-loop SL2 of the HIV-1 Psi RNA Packaging Signal Reveals a Novel A-U-A Base-triple Platform" J. Mol. Biol. 299, 145-156 (2000).
Assembly members:
HIV-1 SL2 stem loop, polymer, 19 residues, 6371 Da.
NCp7 protein, polymer, 55 residues, 6372 Da.
Natural source: Common Name: HIV-1 Taxonomy ID: not available Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus Human Immunodeficiency virus
Experimental source: Production method: enzymatic semisynthesis
Entity Sequences (FASTA):
HIV-1 SL2 stem loop: GGCGACUGGUGAGUACGCC
NCp7 protein: MQKGNFRNQRKTVKCFNCGK
EGHIAKNCRAPRKKGCWKCG
KEGHQMKDCTERQAN
| Data type | Count |
| 13C chemical shifts | 272 |
| 15N chemical shifts | 58 |
| 1H chemical shifts | 456 |
Additional metadata:
Related Database Links:
| DBJ | BAC02557 BAC77486 BAC77487 BAC77511 BAC77512 |
| EMBL | CAD26937 CAD26939 CAD26945 CAD26946 CAD26947 |
| GenBank | AAA44987 AAA81036 AAB60571 AAC28445 AAD03199 |
| SWISS-PROT | P12493 P12497 P35962 P35963 Q73367 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts