BMRB Entry 6007
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6007
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Title: 1H, 13C and 15N resonance assignment of the Plasminogen Kringle 4 Binding Calcium Free Form of the C-type Lectin-like Domain of Tetranectin
Deposition date: 2003-11-14 Original release date: 2004-07-08
Authors: Nielbo, Steen; Thomsen, Jens; Jensen, Peter; Graversen, Jonas; Etzerodt, Michael; Poulsen, Flemming; Thogersen, Hans
Citation: Nielbo, Steen; Thomsen, Jens; Jensen, Peter; Graversen, Jonas; Etzerodt, Michael; Poulsen, Flemming; Thogersen, Hans. "Structure of the Plasminogen Kringle 4 Binding Calcium Free Form of the C-type Lectin-like Domain of Tetranectin" Biochemistry 43, 8636-8643 (2004).
Assembly members:
CTLD of tetranectin, polymer, 137 residues, 15122 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
CTLD of tetranectin: ALQTVCLKGTKVHMKCFLAF
TQTKTFHEASEDCISRGGTL
STPQTGSENDALYEYLRQSV
GNEAEIWLGLNDMAAEGTWV
DMTGARIAYKNWETEITAQP
DGGKTENCAVLSGAANGKWF
DKRCRDQLPYICQFGIV
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 454 |
| 15N chemical shifts | 115 |
| 1H chemical shifts | 681 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | tn3 calcium free form | 1 |
Entities:
Entity 1, tn3 calcium free form 137 residues - 15122 Da.
| 1 | ALA | LEU | GLN | THR | VAL | CYS | LEU | LYS | GLY | THR | ||||
| 2 | LYS | VAL | HIS | MET | LYS | CYS | PHE | LEU | ALA | PHE | ||||
| 3 | THR | GLN | THR | LYS | THR | PHE | HIS | GLU | ALA | SER | ||||
| 4 | GLU | ASP | CYS | ILE | SER | ARG | GLY | GLY | THR | LEU | ||||
| 5 | SER | THR | PRO | GLN | THR | GLY | SER | GLU | ASN | ASP | ||||
| 6 | ALA | LEU | TYR | GLU | TYR | LEU | ARG | GLN | SER | VAL | ||||
| 7 | GLY | ASN | GLU | ALA | GLU | ILE | TRP | LEU | GLY | LEU | ||||
| 8 | ASN | ASP | MET | ALA | ALA | GLU | GLY | THR | TRP | VAL | ||||
| 9 | ASP | MET | THR | GLY | ALA | ARG | ILE | ALA | TYR | LYS | ||||
| 10 | ASN | TRP | GLU | THR | GLU | ILE | THR | ALA | GLN | PRO | ||||
| 11 | ASP | GLY | GLY | LYS | THR | GLU | ASN | CYS | ALA | VAL | ||||
| 12 | LEU | SER | GLY | ALA | ALA | ASN | GLY | LYS | TRP | PHE | ||||
| 13 | ASP | LYS | ARG | CYS | ARG | ASP | GLN | LEU | PRO | TYR | ||||
| 14 | ILE | CYS | GLN | PHE | GLY | ILE | VAL |
Samples:
sample_1: CTLD of tetranectin, [U-13C; U-15N], 0.6 mM; EDTA 2 mM; NaN3 1 mM; D2O 10%
cond1: pH: 6.7; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 15N-HSQC | not available | not available | not available |
| HNCO | not available | not available | not available |
| HNCACB | not available | not available | not available |
| HNCA | not available | not available | not available |
| HN(CO)CA | not available | not available | not available |
| CBCACONH | not available | not available | not available |
| HNCACO | not available | not available | not available |
| 15N-NOESY-HSQC | not available | not available | not available |
| 15N-TOCSY-HSQC | not available | not available | not available |
| 13C-NOESY-HSQC | not available | not available | not available |
| HCCH-TOCSY | not available | not available | not available |
Software:
PRONTO v20020517, Carlsberg A/S - assignment
NMR spectrometers:
- Varian UnityInova 800 MHz
Related Database Links:
| BMRB | 6008 |
| PDB | |
| DBJ | BAG35029 |
| EMBL | CAA45860 CAA50265 CAG46778 CAG46806 CAH18147 |
| GenBank | AAH11024 AAX36546 AAX37102 EAW64735 EAW64736 |
| REF | NP_003269 |
| SWISS-PROT | P05452 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts