BMRB Entry 6321

Name: Chemical Shift assignment of the Ground-State of Delta25-PYP
Published: 2005-07-25

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PDB ID: 1xfn
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6321
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Chemical Shift assignment of the Ground-State of Delta25-PYP PubMed: 16004868

Deposition date: 2004-09-23 Original release date: 2005-07-25

Authors: Bernard, Cedric; Houben, Klaartje; Derix, Nocky; van der Horst, Michael; Hellingwerf, Klaas; Boelens, Rolf; Kaptein, Robert; van Nuland, Nico

Citation: Bernard, Cedric; Houben, Klaartje; Derix, Nocky; Marks, David; van der Horst, Michael; Hellingwerf, Klaas; Boelens, Rolf; Kaptein, Robert; van Nuland, Nico. "The solution structure of a transient photoreceptor intermediate: delta25 photoactive yellow protein." Structure (Cambridge, MA, U. S.) 13, 953-962 (2005).

Assembly members:
Delta25-PYP ground State, polymer, 100 residues, Formula weight is not available

Natural source: Common Name: Ectothiorhodospira halophila Taxonomy ID: 1053 Superkingdom: Bacteria Kingdom: Protista Genus/species: Ectothiorhodospira halophila

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):
Delta25-PYP ground State: LAFGAIQLDGDGNILQYNAA EGDITGRDPKQVIGKNFFKD VAPCTDSPEFYGKFKEGVAS GNLNTMFEYTFDYQMTPTKV KVHMKKALSGDSYWVFVKRV

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts

Data type	Count
13C chemical shifts	184
15N chemical shifts	106
1H chemical shifts	519

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Entity Assembly ID	Entity Name	Entity ID
1	Delta25-PYP ground State	1

Name	Sample	Sample state	Sample conditions
not available	not available	not available	sample_conditions
not available	not available	not available	sample_conditions

Related Database Links:

BMRB	18122 6322
PDB	1D7E 1F98 1F9I 1GSV 1GSW 1GSX 1KOU 1NWZ 1ODV 1OT6 1OT9 1OTA 1OTB 1OTE 1OTI 1S1Y 1S1Z 1S4R 1S4S 1T18 1T19 1T1A 1T1B 1T1C 1TS0 1TS6 1TS7 1TS8 1UGU 1UWN 1UWP 1XFN 1XFQ 2D01 2D02 2I9V 2KX6 2PHY 2PYP 2PYR 2QJ5 2QJ7 2QWS 2ZOH 2ZOI 3PHY 3PYP 3UMD 3UME 3VE3 3VE4 4B9O 4BBT 4BBU 4BBV 4HY8 4I38 4I39 4I3A 4I3I 4I3J 4WL9 4WLA
EMBL	CAA67391
GB	AAA61735 AAB28014
SP	P16113

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts

1	LEU	ALA	PHE	GLY	ALA	ILE	GLN	LEU	ASP	GLY
2	ASP	GLY	ASN	ILE	LEU	GLN	TYR	ASN	ALA	ALA
3	GLU	GLY	ASP	ILE	THR	GLY	ARG	ASP	PRO	LYS
4	GLN	VAL	ILE	GLY	LYS	ASN	PHE	PHE	LYS	ASP
5	VAL	ALA	PRO	CYS	THR	ASP	SER	PRO	GLU	PHE
6	TYR	GLY	LYS	PHE	LYS	GLU	GLY	VAL	ALA	SER
7	GLY	ASN	LEU	ASN	THR	MET	PHE	GLU	TYR	THR
8	PHE	ASP	TYR	GLN	MET	THR	PRO	THR	LYS	VAL
9	LYS	VAL	HIS	MET	LYS	LYS	ALA	LEU	SER	GLY
10	ASP	SER	TYR	TRP	VAL	PHE	VAL	LYS	ARG	VAL

Biological Magnetic Resonance Data Bank

BMRB Entry 6321

Title: Chemical Shift assignment of the Ground-State of Delta25-PYP PubMed: 16004868

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	LEU	ALA	PHE	GLY	ALA	ILE	GLN	LEU	ASP	GLY
2	ASP	GLY	ASN	ILE	LEU	GLN	TYR	ASN	ALA	ALA
3	GLU	GLY	ASP	ILE	THR	GLY	ARG	ASP	PRO	LYS
4	GLN	VAL	ILE	GLY	LYS	ASN	PHE	PHE	LYS	ASP
5	VAL	ALA	PRO	CYS	THR	ASP	SER	PRO	GLU	PHE
6	TYR	GLY	LYS	PHE	LYS	GLU	GLY	VAL	ALA	SER
7	GLY	ASN	LEU	ASN	THR	MET	PHE	GLU	TYR	THR
8	PHE	ASP	TYR	GLN	MET	THR	PRO	THR	LYS	VAL
9	LYS	VAL	HIS	MET	LYS	LYS	ALA	LEU	SER	GLY
10	ASP	SER	TYR	TRP	VAL	PHE	VAL	LYS	ARG	VAL

1	LEU	ALA	PHE	GLY	ALA	ILE	GLN	LEU	ASP	GLY
2	ASP	GLY	ASN	ILE	LEU	GLN	TYR	ASN	ALA	ALA
3	GLU	GLY	ASP	ILE	THR	GLY	ARG	ASP	PRO	LYS
4	GLN	VAL	ILE	GLY	LYS	ASN	PHE	PHE	LYS	ASP
5	VAL	ALA	PRO	CYS	THR	ASP	SER	PRO	GLU	PHE
6	TYR	GLY	LYS	PHE	LYS	GLU	GLY	VAL	ALA	SER
7	GLY	ASN	LEU	ASN	THR	MET	PHE	GLU	TYR	THR
8	PHE	ASP	TYR	GLN	MET	THR	PRO	THR	LYS	VAL
9	LYS	VAL	HIS	MET	LYS	LYS	ALA	LEU	SER	GLY
10	ASP	SER	TYR	TRP	VAL	PHE	VAL	LYS	ARG	VAL

1	LEU	ALA	PHE	GLY	ALA	ILE	GLN	LEU	ASP	GLY
2	ASP	GLY	ASN	ILE	LEU	GLN	TYR	ASN	ALA	ALA
3	GLU	GLY	ASP	ILE	THR	GLY	ARG	ASP	PRO	LYS
4	GLN	VAL	ILE	GLY	LYS	ASN	PHE	PHE	LYS	ASP
5	VAL	ALA	PRO	CYS	THR	ASP	SER	PRO	GLU	PHE
6	TYR	GLY	LYS	PHE	LYS	GLU	GLY	VAL	ALA	SER
7	GLY	ASN	LEU	ASN	THR	MET	PHE	GLU	TYR	THR
8	PHE	ASP	TYR	GLN	MET	THR	PRO	THR	LYS	VAL
9	LYS	VAL	HIS	MET	LYS	LYS	ALA	LEU	SER	GLY
10	ASP	SER	TYR	TRP	VAL	PHE	VAL	LYS	ARG	VAL