BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 6356

Title: Yeast frataxin solution structure   PubMed: 15610019

Deposition date: 2004-10-14 Original release date: 2005-05-03

Authors: He, Y.; Alam, S.; Proteasa, S.; Zhang, Y.; Lesuisse, E.; Dancis, A.; Stemmler, T.

Citation: He, Yanan; Alam, Steve; Proteasa, Simona; Zhang, Yan; Lesuisse, Emmanual; Dancis, Andy; Stemmler, Timothy. "Yeast frataxin solution structure, iron binding and ferrochelatase interaction"  Biochemistry 43, 16254-16262 (2004).

Assembly members:
Saccharomyces cerevisiae, polymer, 123 residues, 13783 Da.

Natural source:   Common Name: Baker   Taxonomy ID: 4932   Superkingdom: not available   Kingdom: not available   Genus/species: Eukaryota Fungi

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
Saccharomyces cerevisiae: MESSTDGQVVPQEVLNLPLE KYHEEADDYLDHLLDSLEEL SEAHPDCIPDVELSHGVMTL EIPAFGTYVINKQPPNKQIW LASPLSGPNRFDLLNGEWVS LRNGTKLTDILTEEVEKAIS KSQ

Data sets:
Data typeCount
1H chemical shifts744
13C chemical shifts510
15N chemical shifts115

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Yfh1 monomer1

Entities:

Entity 1, Yfh1 monomer 123 residues - 13783 Da.

1   METGLUSERSERTHRASPGLYGLNVALVAL
2   PROGLNGLUVALLEUASNLEUPROLEUGLU
3   LYSTYRHISGLUGLUALAASPASPTYRLEU
4   ASPHISLEULEUASPSERLEUGLUGLULEU
5   SERGLUALAHISPROASPCYSILEPROASP
6   VALGLULEUSERHISGLYVALMETTHRLEU
7   GLUILEPROALAPHEGLYTHRTYRVALILE
8   ASNLYSGLNPROPROASNLYSGLNILETRP
9   LEUALASERPROLEUSERGLYPROASNARG
10   PHEASPLEULEUASNGLYGLUTRPVALSER
11   LEUARGASNGLYTHRLYSLEUTHRASPILE
12   LEUTHRGLUGLUVALGLULYSALAILESER
13   LYSSERGLN

Samples:

sample_1: Saccharomyces cerevisiae 1 mM; sodium phosphate buffer 5 mM; DTT 2 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 7; temperature: 298 K; ionic strength: 25 mM

Experiments:

NameSampleSample stateSample conditions
HSQCnot availablenot availablenot available
HNCACBnot availablenot availablenot available
CBCACONHnot availablenot availablenot available
HNCOnot availablenot availablenot available
HCCONH-TOCSYnot availablenot availablenot available
CCONH-TOCSYnot availablenot availablenot available
HCCH-TOCSYnot availablenot availablenot available
2D-1H/1H NOESYnot availablenot availablenot available
3D 15N-seperated NOESYnot availablenot availablenot available
3D 13C-seperated NOESYnot availablenot availablenot available

Software:

VNMR v6.1 - collection

FELIX v950 - processing

DYANA v1.5 - structure solution

CNS v1.1 - refinement

XEASY v1.3.13 - data analysis

NMR spectrometers:

  • Varian INOVA 600 MHz
  • Varian INOVA 720 MHz

Related Database Links:

BMRB 17068 17641
PDB
DBJ GAA22128
EMBL CAA98688 CAY78388
GB AAS56486 AHY74893 EDN60240 EDV08389 EDZ73347
REF NP_010163
SP Q07540
TPG DAA11740

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts