BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 7065

Title: Solution conformation of gaegurin4   PubMed: 17141187

Deposition date: 2006-04-10 Original release date: 2007-09-24

Authors: Chi, S.-W.; Han, K.-H.

Citation: Chi, S.-W.; Kim, J.-S.; Kim, D.-H.; Lee, S.-H.; Park, Y.-H.; Han, K.-H.. "Solution structure and membrane interaction mode of an antimicrobial peptide gaegurin 4"  Biochem. Biophys. Res. Commun. 352, 592-597 (2007).

Assembly members:
gaegurin 4, polymer, 37 residues, Formula weight is not available

Natural source:   Common Name: Rana rugosa   Taxonomy ID: 8410   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Rana rugosa

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
gaegurin 4: GILDTLKQFAKGVGKDLVKG AAQGVLSTVSCKLAKTC

Data sets:
Data typeCount
1H chemical shifts273

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Gaegurin-41

Entities:

Entity 1, Gaegurin-4 37 residues - Formula weight is not available

1   GLYILELEUASPTHRLEULYSGLNPHEALA
2   LYSGLYVALGLYLYSASPLEUVALLYSGLY
3   ALAALAGLNGLYVALLEUSERTHRVALSER
4   CYSLYSLEUALALYSTHRCYS

Samples:

sample_1: gaegurin 4 mM

sample_cond_1: pH: 4; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYnot availablenot availablenot available
2D TOCSYnot availablenot availablenot available
2D DQF-COSYnot availablenot availablenot available

Software:

VNMR v6.1B - collection

FELIX v98.0 - processing

DISCOVER v2.98 - refinement

NMR spectrometers:

  • Varian INOVA 600 MHz