BMRB Entry 7182

Name: NMR Structure of YcgL, a Conserved Protein from Escherichia coli Representing the DUF709 Family with a Novel a/b/a Sandwich Fold
Published: 2007-03-05

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PDB ID: 2h7a
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7182
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: NMR Structure of YcgL, a Conserved Protein from Escherichia coli Representing the DUF709 Family with a Novel a/b/a Sandwich Fold PubMed: 17221885

Deposition date: 2006-06-21 Original release date: 2007-03-05

Authors: Minailiuc, O.; Vavelyuk, O.; Ekiel, I.; Hung, M.-Ni.; Cygler, M.; Gandhi, S.

Citation: Minailiuc, O.; Vavelyuk, O.; Gandhi, S.; Hung, M-N; Cygler, M.; Ekiel, I.. "NMR structure of YcgL, a conserved protein from Escherichia coli representing the DUF709 family, with a novel alpha/beta/alpha sandwich fold" Proteins 66, 1004-1007 (2007).

Assembly members:
Hypothetical protein ycgL, polymer, 110 residues, Formula weight is not available

Natural source: Common Name: Escherichia coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):
Hypothetical protein ycgL: GSMPKPGILKSKSMFCVIYR SSKRDQTYLYVEKKDDFSRV PEELMKGFGQPQLAMILPLD GRKKLVNADIEKVKQALTEQ GYYLQLPPPPEDLLKQHLSV MGQKTDDTNK

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	422
15N chemical shifts	99
1H chemical shifts	612

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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1	GLY	SER	MET	PRO	LYS	PRO	GLY	ILE	LEU	LYS
2	SER	LYS	SER	MET	PHE	CYS	VAL	ILE	TYR	ARG
3	SER	SER	LYS	ARG	ASP	GLN	THR	TYR	LEU	TYR
4	VAL	GLU	LYS	LYS	ASP	ASP	PHE	SER	ARG	VAL
5	PRO	GLU	GLU	LEU	MET	LYS	GLY	PHE	GLY	GLN
6	PRO	GLN	LEU	ALA	MET	ILE	LEU	PRO	LEU	ASP
7	GLY	ARG	LYS	LYS	LEU	VAL	ASN	ALA	ASP	ILE
8	GLU	LYS	VAL	LYS	GLN	ALA	LEU	THR	GLU	GLN
9	GLY	TYR	TYR	LEU	GLN	LEU	PRO	PRO	PRO	PRO
10	GLU	ASP	LEU	LEU	LYS	GLN	HIS	LEU	SER	VAL
11	MET	GLY	GLN	LYS	THR	ASP	ASP	THR	ASN	LYS

Name	Sample	Sample state	Sample conditions
2D NOESY	sample_1	not available	sample_cond_1
3D 15N-separated NOESY	sample_1	not available	sample_cond_1
3D 13C-separated NOESY	sample_1	not available	sample_cond_1
2D TOCSY	sample_1	not available	sample_cond_1
HNHA	sample_1	not available	sample_cond_1
HNCACB	sample_1	not available	sample_cond_1
CBCA(CO)NH	sample_1	not available	sample_cond_1
HN(CA)CO	sample_1	not available	sample_cond_1
HBHA(CO)NH	sample_1	not available	sample_cond_1
3D-HCCH-TOCSY	sample_1	not available	sample_cond_1
1H-15N TOCSY-HMQC	sample_1	not available	sample_cond_1

PDB	2H7A
DBJ	BAA36013 BAB35097 BAG76750 BAI24991 BAI30116
EMBL	CAP75714 CAQ31681 CAQ98057 CAR02568 CAR07521
GB	AAC74263 AAG56030 AAN42784 AAN80092 AAP16675
REF	NP_287418 NP_309701 NP_415697 NP_707077 NP_753532
SP	A1AAA3 A7ZKV0 A7ZZB3 B1IUB2 B1LHY8

Biological Magnetic Resonance Data Bank

BMRB Entry 7182

Title: NMR Structure of YcgL, a Conserved Protein from Escherichia coli Representing the DUF709 Family with a Novel a/b/a Sandwich Fold PubMed: 17221885

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	MET	PRO	LYS	PRO	GLY	ILE	LEU	LYS
2	SER	LYS	SER	MET	PHE	CYS	VAL	ILE	TYR	ARG
3	SER	SER	LYS	ARG	ASP	GLN	THR	TYR	LEU	TYR
4	VAL	GLU	LYS	LYS	ASP	ASP	PHE	SER	ARG	VAL
5	PRO	GLU	GLU	LEU	MET	LYS	GLY	PHE	GLY	GLN
6	PRO	GLN	LEU	ALA	MET	ILE	LEU	PRO	LEU	ASP
7	GLY	ARG	LYS	LYS	LEU	VAL	ASN	ALA	ASP	ILE
8	GLU	LYS	VAL	LYS	GLN	ALA	LEU	THR	GLU	GLN
9	GLY	TYR	TYR	LEU	GLN	LEU	PRO	PRO	PRO	PRO
10	GLU	ASP	LEU	LEU	LYS	GLN	HIS	LEU	SER	VAL
11	MET	GLY	GLN	LYS	THR	ASP	ASP	THR	ASN	LYS

1	GLY	SER	MET	PRO	LYS	PRO	GLY	ILE	LEU	LYS
2	SER	LYS	SER	MET	PHE	CYS	VAL	ILE	TYR	ARG
3	SER	SER	LYS	ARG	ASP	GLN	THR	TYR	LEU	TYR
4	VAL	GLU	LYS	LYS	ASP	ASP	PHE	SER	ARG	VAL
5	PRO	GLU	GLU	LEU	MET	LYS	GLY	PHE	GLY	GLN
6	PRO	GLN	LEU	ALA	MET	ILE	LEU	PRO	LEU	ASP
7	GLY	ARG	LYS	LYS	LEU	VAL	ASN	ALA	ASP	ILE
8	GLU	LYS	VAL	LYS	GLN	ALA	LEU	THR	GLU	GLN
9	GLY	TYR	TYR	LEU	GLN	LEU	PRO	PRO	PRO	PRO
10	GLU	ASP	LEU	LEU	LYS	GLN	HIS	LEU	SER	VAL
11	MET	GLY	GLN	LYS	THR	ASP	ASP	THR	ASN	LYS

1	GLY	SER	MET	PRO	LYS	PRO	GLY	ILE	LEU	LYS
2	SER	LYS	SER	MET	PHE	CYS	VAL	ILE	TYR	ARG
3	SER	SER	LYS	ARG	ASP	GLN	THR	TYR	LEU	TYR
4	VAL	GLU	LYS	LYS	ASP	ASP	PHE	SER	ARG	VAL
5	PRO	GLU	GLU	LEU	MET	LYS	GLY	PHE	GLY	GLN
6	PRO	GLN	LEU	ALA	MET	ILE	LEU	PRO	LEU	ASP
7	GLY	ARG	LYS	LYS	LEU	VAL	ASN	ALA	ASP	ILE
8	GLU	LYS	VAL	LYS	GLN	ALA	LEU	THR	GLU	GLN
9	GLY	TYR	TYR	LEU	GLN	LEU	PRO	PRO	PRO	PRO
10	GLU	ASP	LEU	LEU	LYS	GLN	HIS	LEU	SER	VAL
11	MET	GLY	GLN	LYS	THR	ASP	ASP	THR	ASN	LYS