BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 18418

Title: Pleurocidin-NH2

Deposition date: 2012-04-24 Original release date: 2013-04-01

Authors: Vermeer, Louic; Kozlowska, Justyna; Mason, James

Citation: Vermeer, Louic; Kozlowska, Justyna; Lorenz, Chris; Mason, James. "All Atom Simulations of the Initial Binding of Magainin and Pleurocidin to Membranes Comprising of a Mixture of Anionic and Zwitterionic Lipids"  Not known ., .-..

Assembly members:
pleurocidin, polymer, 25 residues, 2718.215 Da.

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
pleurocidin: GWGSFFKKAAHVGKHVGKAA LTHYL

Data sets:
Data typeCount
1H chemical shifts142

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1pleurocidin1

Entities:

Entity 1, pleurocidin 25 residues - 2718.215 Da.

1   GLYTRPGLYSERPHEPHELYSLYSALAALA
2   HISVALGLYLYSHISVALGLYLYSALAALA
3   LEUTHRHISTYRLEU

Samples:

sample_1: TRIS 5 mM; pleurocidin 1 mM; SDS, [U-2H], 100 mM; TSP 0.05%; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 5 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection, processing

ARIA, Linge, O, . - refinement, structure solution

ProcheckNMR, Laskowski and MacArthur - data analysis

AQUA, Rullmann, Doreleijers and Kaptein - data analysis

SPARKY, Goddard - chemical shift assignment, peak picking

NMR spectrometers:

  • Bruker Avance 500 MHz

Related Database Links:

PDB
GB AAF17252 AAF17253 AAG10397 AAK52842 AAK52846
SP P81941 Q90ZY0