BMRB Entry 26708
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR26708
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry
Title: Backbone Assignment of Human NEMO residues 258-350 PubMed: 26740240
Deposition date: 2015-11-24 Original release date: 2016-01-14
Authors: Halander, Jenny; Messias, Ana; Geerlof, Arie; Sattler, Michael
Citation: Vincendeau, Michelle; Kamyar, Hadian; Messias, Ana; Brenke, Jara; Halander, Jenny; Griesbach, Richard; Greczmiel, Ute; Bertossi, Arianna; Stehle, Ralf; Nagel, Daniel; Demski, Kathrin; Velvarska, Hana; Niessing, Dierk; Geerlof, Arie; Sattler, Michael; Krappmann, Daniel. "Inhibition of Canonical NF-kB Signaling by a Small Molecule Targeting NEMO-Ubiquitin Interaction" Sci. Rep. 6, 18934-18934 (2016).
Assembly members:
NEMO, polymer, 95 residues, 11011.5 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
NEMO: GAMQLEDLKQQLQQAEEALV
AKQEVIDKLKEEAEQHKIVM
ETVPVLKAQADIYKADFQAE
RQAREKLAEKKELLQEQLEQ
LQREYSKLKASCQES
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 148 |
15N chemical shifts | 75 |
1H chemical shifts | 75 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | NEMO 1 | 1 |
2 | NEMO 2 | 1 |
Entities:
Entity 1, NEMO 1 95 residues - 11011.5 Da.
Residues 1-2 are non-native residues that remain after cleavage of the N-terminal affinity tag.
1 | GLY | ALA | MET | GLN | LEU | GLU | ASP | LEU | LYS | GLN | ||||
2 | GLN | LEU | GLN | GLN | ALA | GLU | GLU | ALA | LEU | VAL | ||||
3 | ALA | LYS | GLN | GLU | VAL | ILE | ASP | LYS | LEU | LYS | ||||
4 | GLU | GLU | ALA | GLU | GLN | HIS | LYS | ILE | VAL | MET | ||||
5 | GLU | THR | VAL | PRO | VAL | LEU | LYS | ALA | GLN | ALA | ||||
6 | ASP | ILE | TYR | LYS | ALA | ASP | PHE | GLN | ALA | GLU | ||||
7 | ARG | GLN | ALA | ARG | GLU | LYS | LEU | ALA | GLU | LYS | ||||
8 | LYS | GLU | LEU | LEU | GLN | GLU | GLN | LEU | GLU | GLN | ||||
9 | LEU | GLN | ARG | GLU | TYR | SER | LYS | LEU | LYS | ALA | ||||
10 | SER | CYS | GLN | GLU | SER |
Samples:
sample_1: NEMO, [U-13C; U-15N; U-2H], 1.2 mM; D2O 10%; H2O 90%; sodium phosphate 50 mM; sodium NaCl 50 mM
sample_conditions_1: ionic strength: 0.1 M; pH: 7.0; pressure: 1 atm; temperature: 308 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N TROSY | sample_1 | isotropic | sample_conditions_1 |
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
3D HNCA | sample_1 | isotropic | sample_conditions_1 |
3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
3D HN(CO)CA | sample_1 | isotropic | sample_conditions_1 |
3D HN(CA)CO | sample_1 | isotropic | sample_conditions_1 |
3D HN(CO)CACB | sample_1 | isotropic | sample_conditions_1 |
Software:
TOPSPIN, Bruker Biospin - collection
CARA, Keller and Wuthrich - chemical shift assignment, peak picking
NMR spectrometers:
- Bruker AV III 800 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts