BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 30256

Title: Brassica napus DGAT1 exosite

Deposition date: 2017-02-26 Original release date: 2017-12-26

Authors: Acedo, J.; Vederas, J.

Citation: Acedo, J.; Vederas, J.. "Brassica napus DGAT1 exosite"  . ., .-..

Assembly members:
O-acyltransferase, polymer, 33 residues, 3877.332 Da.

Natural source:   Common Name: Rape   Taxonomy ID: 3708   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Brassica napus

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
O-acyltransferase: NVDVRYTYRPSVPAHRRVRE SPLSSDAIFKQSH

Data sets:
Data typeCount
15N chemical shifts31
1H chemical shifts234

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 33 residues - 3877.332 Da.

1   ASNVALASPVALARGTYRTHRTYRARGPRO
2   SERVALPROALAHISARGARGVALARGGLU
3   SERPROLEUSERSERASPALAILEPHELYS
4   GLNSERHIS

Samples:

sample_1: BnaDGAT1 exosite 1 mM; DSS 0.01%; sodium chloride 25 mM; sodium phosphate 30 mM

sample_conditions_1: ionic strength: 55 mM; pH: 6.3; pressure: 1 atm; temperature: 300 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYsample_1isotropicsample_conditions_1
2D TOCSYsample_1isotropicsample_conditions_1
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment, peak picking

CYANA, Guntert, Mumenthaler and Wuthrich - refinement, structure calculation

NMR spectrometers:

  • Varian VNMRS 700 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts