BMRB Entry 5806
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5806
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Title: Solution structure of the recombinant Penaeidin-3, a shrimp antimicrobial peptide PubMed: 12842879
Deposition date: 2003-05-22 Original release date: 2003-09-28
Authors: Yang, Yinshan; Poncet, Joel; Garnier, Julien; Zatylny, Celine; Bachere, Evelyne; Aumelas, Andre
Citation: Yang, Yinshan; Poncet, Joel; Garnier, Julien; Zatylny, Celine; Bachere, Evelyne; Aumelas, Andre. "Solution Structure of the Recombinant Penaeidin-3, a Shrimp Antimicrobial Peptide" J. Biol. Chem. 278, 36859-36867 (2003).
Assembly members:
penaeidin-3, polymer, 63 residues, 6656.3 Da.
Natural source: Common Name: Pacific white shrimp Taxonomy ID: 6689 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Litopenaeus vannamei
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
penaeidin-3: QVYKGGYARPIPRPPPFVRP
LPGGPIGPYNGCPVSCRGIS
FSQARSCCSRLGRCCHVGKG
YSG
- assigned_chemical_shifts
Data type | Count |
1H chemical shifts | 410 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | pen-3a monomer | 1 |
Entities:
Entity 1, pen-3a monomer 63 residues - 6656.3 Da.
1 | GLN | VAL | TYR | LYS | GLY | GLY | TYR | ALA | ARG | PRO | ||||
2 | ILE | PRO | ARG | PRO | PRO | PRO | PHE | VAL | ARG | PRO | ||||
3 | LEU | PRO | GLY | GLY | PRO | ILE | GLY | PRO | TYR | ASN | ||||
4 | GLY | CYS | PRO | VAL | SER | CYS | ARG | GLY | ILE | SER | ||||
5 | PHE | SER | GLN | ALA | ARG | SER | CYS | CYS | SER | ARG | ||||
6 | LEU | GLY | ARG | CYS | CYS | HIS | VAL | GLY | LYS | GLY | ||||
7 | TYR | SER | GLY |
Samples:
sample_1: penaeidin-3 mM
Exp-cond_1: pH: 3.9; temperature: 285 K
Exp-cond_2: pH: 3.9; temperature: 293 K
Exp-cond_3: pH: 3.9; temperature: 300 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
DQF-COSY | not available | not available | not available |
TOCSY | not available | not available | not available |
NOESY | not available | not available | not available |
Software:
xwinnmr - collection of data, processing
NMR spectrometers:
- BRUKER AVANCE 600 MHz
- BRUKER AVANCE 500 MHz