BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 10129

Title: Solution structure of the first Fn3 domain of Sidekick-2 protein

Deposition date: 2007-04-02 Original release date: 2008-09-02

Authors: Qin, X.; Hayashi, F.; Yokoyama, S.

Citation: Qin, X.; Hayashi, F.; Yokoyama, S.. "Solution structure of the first Fn3 domain of Sidekick-2 protein"  Not known ., .-..

Assembly members:
FNIII domain, polymer, 121 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis

Entity Sequences (FASTA):
FNIII domain: GSSGSSGRSAHLRVRQLPHA PEHPVATLSTVERRAINLTW TKPFDGNSPLIRYILEMSEN NAPWTVLLASVDPKATSVTV KGLVPARSYQFRLCAVNDVG KGQFSKDTERVSLPESGPSS G

Data sets:
Data typeCount
13C chemical shifts514
15N chemical shifts115
1H chemical shifts809

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1sidekick 2 protein1

Entities:

Entity 1, sidekick 2 protein 121 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYARGSERALA
2   HISLEUARGVALARGGLNLEUPROHISALA
3   PROGLUHISPROVALALATHRLEUSERTHR
4   VALGLUARGARGALAILEASNLEUTHRTRP
5   THRLYSPROPHEASPGLYASNSERPROLEU
6   ILEARGTYRILELEUGLUMETSERGLUASN
7   ASNALAPROTRPTHRVALLEULEUALASER
8   VALASPPROLYSALATHRSERVALTHRVAL
9   LYSGLYLEUVALPROALAARGSERTYRGLN
10   PHEARGLEUCYSALAVALASNASPVALGLY
11   LYSGLYGLNPHESERLYSASPTHRGLUARG
12   VALSERLEUPROGLUSERGLYPROSERSER
13   GLY

Samples:

sample_1: FNIII domain, [U-13C; U-15N], 1.29 mM; PiNa 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1isotropiccondition_1
3D 15N-separated NOESYsample_1isotropiccondition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.854, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Varian INOVA 800 MHz

Related Database Links:

PDB

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts