BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 10195

Title: Solution structure of the second SH3 domain of human Vinexin

Authors: Abe, H.; Tochio, N.; Miyamoto, K.; Saito, K.; Sasagawa, A.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation: Abe, H.; Tochio, N.; Miyamoto, K.; Saito, K.; Sasagawa, A.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the second SH3 domain of human Vinexin"  . ., .-..

Assembly members:
SH3 domain, polymer, 90 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis

Entity Sequences (FASTA):
SH3 domain: GSSGSSGKPPTYQVLEYGEA VAQYTFKGDLEVELSFRKGE HICLIRKVNENWYEGRITGT GRQGIFPASYVQVSREPRLR LCDDSGPSSG

Data sets:
Data typeCount
13C chemical shifts356
15N chemical shifts82
1H chemical shifts571

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1SH3 domain1

Entities:

Entity 1, SH3 domain 90 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYLYSPROPRO
2   THRTYRGLNVALLEUGLUTYRGLYGLUALA
3   VALALAGLNTYRTHRPHELYSGLYASPLEU
4   GLUVALGLULEUSERPHEARGLYSGLYGLU
5   HISILECYSLEUILEARGLYSVALASNGLU
6   ASNTRPTYRGLUGLYARGILETHRGLYTHR
7   GLYARGGLNGLYILEPHEPROALASERTYR
8   VALGLNVALSERARGGLUPROARGLEUARG
9   LEUCYSASPASPSERGLYPROSERSERGLY

Samples:

sample_1: SH3 domain, [U-13C; U-15N], 1.00 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F - processing

NMNMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9747, Kobayashi, N. - data analysis

CYANA v2.0.17, Guentert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

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