BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 10254

Title: Solution structure of the C-terminal PH domain of FYVE, RhoGEF and PH domain containing protein 3 (FGD3) from human

Authors: Li, H.; Tomizawa, T.; Tochio, N.; Muto, Y.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation: Li, H.; Tomizawa, T.; Tochio, N.; Muto, Y.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the C-terminal PH domain of FYVE, RhoGEF and PH domain containing protein 3 (FGD3) from human"  . ., .-..

Assembly members:
PH domain, polymer, 112 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis

Entity Sequences (FASTA):
PH domain: GSSGSSGSLLCGPLRLSESG ETWSEVWAAIPMSDPQVLHL QGGSQDGRLPRTIPLPSCKL SVPDPEERLDSGHVWKLQWA KQSWYLSASSAELQQQWLET LSTAAHSGPSSG

Data sets:
Data typeCount
13C chemical shifts454
15N chemical shifts108
1H chemical shifts711

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PH domain1

Entities:

Entity 1, PH domain 112 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYSERLEULEU
2   CYSGLYPROLEUARGLEUSERGLUSERGLY
3   GLUTHRTRPSERGLUVALTRPALAALAILE
4   PROMETSERASPPROGLNVALLEUHISLEU
5   GLNGLYGLYSERGLNASPGLYARGLEUPRO
6   ARGTHRILEPROLEUPROSERCYSLYSLEU
7   SERVALPROASPPROGLUGLUARGLEUASP
8   SERGLYHISVALTRPLYSLEUGLNTRPALA
9   LYSGLNSERTRPTYRLEUSERALASERSER
10   ALAGLULEUGLNGLNGLNTRPLEUGLUTHR
11   LEUSERTHRALAALAHISSERGLYPROSER
12   SERGLY

Samples:

sample_1: PH domain, [U-13C; U-15N], 1.20 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1isotropiccondition_1
3D 15N-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20031121, Delaglio, F - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9295, Kobayashi, N. - data analysis

CYANA v2.0.17, Guentert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAF85365 BAG63386 BAK63162
EMBL CAH92885
GB AAH32429 AAI11055 ACE86816 ACE87503 EAW62840
REF NP_001077005 NP_001126690 NP_001273922 NP_149077 XP_003807897
SP Q5JSP0 Q5R5T1