BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 10257

Title: Solution structures of the C2H2 type zinc finger domain of human zinc finger BED domain containing protein 2

Authors: Sato, M.; Sasagawa, A.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation: Sato, M.; Sasagawa, A.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structures of the C2H2 type zinc finger domain of human zinc finger BED domain containing protein 2"  . ., .-..

Assembly members:
C2H2 type zinc finger domain, polymer, 76 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: Cell free synthesis

Entity Sequences (FASTA):
C2H2 type zinc finger domain: GSSGSSGSEAWEYFHLAPAR AGHHPNQYATCRLCGRQVSR GPGVNVGTTALWKHLKSMHR EELEKSGHGQSGPSSG

Data sets:
Data typeCount
13C chemical shifts282
15N chemical shifts59
1H chemical shifts423

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1C2H2 type zinc finger domain1
2ZINC ION2

Entities:

Entity 1, C2H2 type zinc finger domain 76 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYSERGLUALA
2   TRPGLUTYRPHEHISLEUALAPROALAARG
3   ALAGLYHISHISPROASNGLNTYRALATHR
4   CYSARGLEUCYSGLYARGGLNVALSERARG
5   GLYPROGLYVALASNVALGLYTHRTHRALA
6   LEUTRPLYSHISLEULYSSERMETHISARG
7   GLUGLULEUGLULYSSERGLYHISGLYGLN
8   SERGLYPROSERSERGLY

Entity 2, ZINC ION - Zn - 65.409 Da.

1   ZN

Samples:

sample_1: C2H2 type zinc finger domain, [U-13C; U-15N], 1 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; ZnCl2 0.05 mM; IDA 1 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1isotropiccondition_1
3D 15N-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guentert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 900 MHz

Related Database Links:

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