BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 10301

Title: Solution structures of the SH3 domain of human Crk-like protein

Authors: Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation: Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structures of the SH3 domain of human Crk-like protein"  . ., .-..

Assembly members:
SH3 domain, polymer, 88 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis

Entity Sequences (FASTA):
SH3 domain: GSSGSSGPLPSTQNGPVFAK AIQKRVPCAYDKTALALEVG DIVKVTRMNINGQWEGEVNG RKGLFPFTHVKIFDPQNPDE NESGPSSG

Data sets:
Data typeCount
13C chemical shifts327
15N chemical shifts68
1H chemical shifts520

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1SH3 domain1

Entities:

Entity 1, SH3 domain 88 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYPROLEUPRO
2   SERTHRGLNASNGLYPROVALPHEALALYS
3   ALAILEGLNLYSARGVALPROCYSALATYR
4   ASPLYSTHRALALEUALALEUGLUVALGLY
5   ASPILEVALLYSVALTHRARGMETASNILE
6   ASNGLYGLNTRPGLUGLYGLUVALASNGLY
7   ARGLYSGLYLEUPHEPROPHETHRHISVAL
8   LYSILEPHEASPPROGLNASNPROASPGLU
9   ASNGLUSERGLYPROSERSERGLY

Samples:

sample_1: SH3 domain, [U-13C; U-15N], 1 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1isotropiccondition_1
3D 15N-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 700 MHz

Related Database Links:

PDB
DBJ BAC33406 BAC34933 BAE37567
EMBL CAA62220
GB AAH85865 AAI31985 AAI31987 EDK97459 EDL77890
REF NP_001008285 NP_031790 XP_002719763 XP_002926331 XP_003133042
SP P47941 Q5U2U2
TPG DAA20421